[RICHARD C. CRONN, RANDALL L. SMALL, TAMARA HASELKORN, AND JONATHAN F. WENDEL. 2002. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. American Journal of Botany 89(4): 731-749] #NEXUS [Cronn et al., "Rapid diversification of the cotton genus(Gossypium:Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes] [PAUP/NEXUS Data set of 4 combined chloroplast loci. Taxon abbreviations are summarized in Materials and Methods and Table 1. gene order: ndhF = 1-2064; rpl16 = 2065-3221; trnT-trnL = 3222-4817; matK = 4818-7370; Poorly aligned regions need to be removed prior to analysis. These include positions 2537-2585 from rpl16, 3519-3672 from trnT-trnL, and 7328-7370 from matK. These positions are defined in the "CHARSET" block at the end of the file] BEGIN DATA; DIMENSIONS NTAX=9 NCHAR=7370; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ; MATRIX [ 10 20 30 40 50 60] [ . . . . . .] A_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] B_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] C_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] D_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] E_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] G_genome TTTGTTCCACTT???ATTCCTATTTTAATAGGAAT????CTCCTACTTTTTCCGACGGCA [60] G_genome ???????CACTTCCCATTCCTATTTTAATAGGAATGGGACTCCTACTTTTTCCGACGGCA [60] Gossyp.kirkii TTTGTTCCACTTCCCATTCCTATTTTAATAGGAGT????CTCCTACTTTTTCCGACGGCA [60] Kokia.drynar TTTGTTCCACTTCCCATTCCTATTTTAATAGGAGT????CTCCTACTTTTTCCGACGGCA [60] [ 70 80 90 100 110 120] [ . . . . . .] A_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] B_genome ACAAAAAATCTTCGTCGTATATGGGCTTTTCCCACTATTTTATTGTTAAGTATAGTTATG [120] C_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] D_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] E_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] G_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] G_genome ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] Gossyp.kirkii ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] Kokia.drynar ACAAAAAATCTTCGTCGTATGTGGGCTTTTCCCAATATTTTATTGTTAAGTATAGTTATG [120] [ 130 140 150 160 170 180] [ . . . . . .] A_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] B_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] C_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] D_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] E_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] G_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] G_genome ATTTTTTCGCTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] Gossyp.kirkii ATTTTTTCGGTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] Kokia.drynar ATTTTTTCGGTCGATCTGTCTATTCAGCAAATAAATGGAAGTTCTATCTATCAATATGTA [180] [ 190 200 210 220 230 240] [ . . . . . .] A_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] B_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] C_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] D_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] E_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] G_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] G_genome TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] Gossyp.kirkii TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] Kokia.drynar TGGTCTTGGACCATCAATAATGATTTTTCTTTCGAGTTTGGCTACTTTATTGATTCACTT [240] [ 250 260 270 280 290 300] [ . . . . . .] A_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] B_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] C_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] D_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] E_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] G_genome ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] G_genome ACCTCTATTATGTTAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] Gossyp.kirkii ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] Kokia.drynar ACCTCTATTATGTCAATATTAATCACTACTGTTGGAATTTTTGTTCTTATTTATAGTGAC [300] [ 310 320 330 340 350 360] [ . . . . . .] A_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] B_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] C_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] D_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] E_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] G_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] G_genome AATTATATGTCTCATGATGAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] Gossyp.kirkii AATTATATGTCTCATGATCAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] Kokia.drynar AATTATATGTCTCATGATCAAGGATATTTGAGATTTTTTGCTTATATGAGTTTGTTCAAT [360] [ 370 380 390 400 410 420] [ . . . . . .] A_genome ACTTCAATGTTGGGATTAGTTACTAGTTCTAATTTGATACAAATTTATATTTTTTGGGAA [420] B_genome ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] C_genome ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] D_genome ACTTCAATGTTGGGATTAGTGACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] E_genome ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] G_genome ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] G_genome ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] Gossyp.kirkii ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] Kokia.drynar ACTTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATACAAATTTATATTTTTTGGGAA [420] [ 430 440 450 460 470 480] [ . . . . . .] A_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] B_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] C_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] D_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] E_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] G_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] G_genome TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] Gossyp.kirkii TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] Kokia.drynar TTAGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACACGACCCGCTGCGGCA [480] [ 490 500 510 520 530 540] [ . . . . . .] A_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] B_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] C_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] D_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] E_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] G_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] G_genome AACGCTTGTCAAAAAGCGTTTGTAACTAATCGTATAGGCGATTTTGGTTTATTATTAGGA [540] Gossyp.kirkii AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] Kokia.drynar AACGCTTGTCAAAAAGCGTTTGTAACTAATCGGATAGGCGATTTTGGTTTATTATTAGGA [540] [ 550 560 570 580 590 600] [ . . . . . .] A_genome ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] B_genome ATCTTAGGTTTCTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] C_genome ATCTTAGGTTTCTATTGGATAACGGGAAGTTTAGAATTTCAAGATTTGTTCGAAATATTT [600] D_genome ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] E_genome ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] G_genome ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] G_genome ATCTTAGGTTTCTATTGGATAACGGGAAGTTTCGAATTTCAAGATTTGTTCGAAATATTT [600] Gossyp.kirkii ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTCCAAGATTTGTTCGAAATATTT [600] Kokia.drynar ATCTTAGGTTTTTATTGGATAACGGGAAGTTTCGAATTCCAAGATTTGTTCGAAATATTT [600] [ 610 620 630 640 650 660] [ . . . . . .] A_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] B_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTCTTACTTTATGTGCCTCTTTA [660] C_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] D_genome AATAACTTGATTTATAATAATGAGGTTAATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] E_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] G_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] G_genome AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] Gossyp.kirkii AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] Kokia.drynar AATAACTTGATTTATAATAATGAGGTTCATTTTTTATTTGTTACTTTATGTGCCTCTTTA [660] [ 670 680 690 700 710 720] [ . . . . . .] A_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGAT [720] B_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] C_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] D_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] E_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] G_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] G_genome TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] Gossyp.kirkii TTATTTGCCGGCGCAGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] Kokia.drynar TTATTTGCCGGCGCGGTTGCTAAATCTGCGCAATTTCCTCTTCATGTATGGTTACCTGAT [720] [ 730 740 750 760 770 780] [ . . . . . .] A_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] B_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] C_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] D_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] E_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] G_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] G_genome GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] Gossyp.kirkii GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] Kokia.drynar GCCATGGAGGGGCCTACTCCTATTTCGGCTCTTATACATGCTGCCACTATGGTAGCTGCG [780] [ 790 800 810 820 830 840] [ . . . . . .] A_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] B_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] C_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] D_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] E_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] G_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] G_genome GGAATTTTTCTTGTAGCCCGCCTGCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] Gossyp.kirkii GGAATTTTTCTTGTAGCCCGCCTTCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] Kokia.drynar GGAATTTTTCTTGTAGCCCGCCTTCTTCCTCTTTTTATAGTTATACCTTACATAATGAAT [840] [ 850 860 870 880 890 900] [ . . . . . .] A_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] B_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] C_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] D_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] E_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] G_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] G_genome CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCTACTTTAGCCCTTGCTCAA [900] Gossyp.kirkii CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCCACTTTAGCCCTTGCTCAA [900] Kokia.drynar CTAATATCTTTGATAGGTATAATAACGGTATTATTAGGGGCCACTTTAGCCCTTGCTCAA [900] [ 910 920 930 940 950 960] [ . . . . . .] A_genome AACGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] B_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTTGGTTATATGATGTTA [960] C_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTTGGTTATATGATGTTA [960] D_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] E_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] G_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] G_genome AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTTGGTTATATGATGTTA [960] Gossyp.kirkii AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] Kokia.drynar AAAGATATTAAGAGGGGTTTAGCCTATTCTACAATGTCCCAACTGGGTTATATGATGTTA [960] [ 970 980 990 1000 1010 1020] [ . . . . . .] A_genome GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] B_genome GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] C_genome GCTCTAGGTATGGGGTCTTACCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] D_genome GCTCTAGGTATGGGGTCTTATCGCGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] E_genome GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] G_genome GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] G_genome GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] Gossyp.kirkii GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] Kokia.drynar GCTCTAGGTATGGGGTCTTATCGAGCCGCTTTATTTCATTTGATTACTCATGCTTATTCG [1020] [ 1030 1040 1050 1060 1070 1080] [ . . . . . .] A_genome AAAGCGTTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] B_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] C_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] D_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] E_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] G_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] G_genome AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] Gossyp.kirkii AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] Kokia.drynar AAAGCATTGTTGTTTTTAGCATCCGGATCGATTATTCATTCCATGGAAGCTATTGTTGGA [1080] [ 1090 1100 1110 1120 1130 1140] [ . . . . . .] A_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] B_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] C_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] D_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] E_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] G_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] G_genome TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCATGTGCCC [1140] Gossyp.kirkii TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] Kokia.drynar TATTCTCCAGAGAAAAGCCAGAATATGGTTTTTATGGGCGGTTTAAGAAAGCACGTGCCC [1140] [ 1150 1160 1170 1180 1190 1200] [ . . . . . .] A_genome GTTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGCGGTATTCCACCCCTTGCT [1200] B_genome ATTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] C_genome ATTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] D_genome ATTACCAAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] E_genome ATTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] G_genome GTTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] G_genome ATTACCCAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] Gossyp.kirkii ATTACACAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] Kokia.drynar ATTACACAAATTGCTTTTTTAGTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCT [1200] [ 1210 1220 1230 1240 1250 1260] [ . . . . . .] A_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] B_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] C_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] D_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] E_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] G_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] G_genome TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCACCGATTTTTGCA [1260] Gossyp.kirkii TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCCCCGATTTTTGCA [1260] Kokia.drynar TGTTTTTGGTCCAAAGATGAAATTCTTAGTGACAGTTGGTTGTATTCCCCGATTTTTGCA [1260] [ 1270 1280 1290 1300 1310 1320] [ . . . . . .] A_genome ATAATAGCTTGGTCCACTGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] B_genome ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] C_genome ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] D_genome ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] E_genome ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] G_genome ATAATAGCTTGGTCCACTGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] G_genome ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] Gossyp.kirkii ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] Kokia.drynar ATAATAGCTTGGTCCACCGCCGGATTAACAGCATTTTATATGTTTCGGATCTATTTACTT [1320] [ 1330 1340 1350 1360 1370 1380] [ . . . . . .] A_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] B_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] C_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGTCAAAAAAAGTAGCTCT [1380] D_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] E_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] G_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] G_genome ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGTCAAAAAAAGTAGCTCT [1380] Gossyp.kirkii ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] Kokia.drynar ACTTTTGAAGGACATTTAAACGTTCATTTTCAAAAATATAGTGGCAAAAAAAGTAGCTCT [1380] [ 1390 1400 1410 1420 1430 1440] [ . . . . . .] A_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] B_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] C_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] D_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGCAATTTTCGT [1440] E_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] G_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] G_genome TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAAATTTTCGT [1440] Gossyp.kirkii TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGGGATTTTCGT [1440] Kokia.drynar TTCTATTCAATAAAACTATGGGGTAAAGAAGAGCAAAAAATAATTAACAGAGATTTTCGT [1440] [ 1450 1460 1470 1480 1490 1500] [ . . . . . .] A_genome TTATTTCCTTTATTA------ACAATGAATAACAACGAGCAGCCATATACAATTGGTGGA [1494] B_genome TTATTTCCTTTATTA------ACAATGAATAACAACGAGCAGCCATATACAATTGGTGGA [1494] C_genome TTATTTCCTTTATTAACATTAACAATGAATAACAACGAGCAGCCATATACAATTGTTGGA [1500] D_genome TTATTTCCTTTATTACCATTAACAATGAATAAGAACGAGCAGCCATATACAATTGGTGAA [1500] E_genome TTATTTCCTTTATTA------ACAATGAATAACAACGAGCAGCCATATACAATTGGTGGA [1494] G_genome TTATTTCCTTTATTAACATTAACAATGAATAACAACGAGCAGCCATATACAATTGGTGGA [1500] G_genome TTATTTCCTTTATTAACATTAACAATGAATAACAACGAGCAGCCATATACAATTGGTGGA [1500] Gossyp.kirkii TTATTTCCTTTATTAACATTAACAATGAATAACAACGAGCAGCCATATACAATTGGCGTA [1500] Kokia.drynar TTATTTCCTTTATTAACATTAACAATGAATAACAACGAGCAGCCATATACAATTGGCGTA [1500] [ 1510 1520 1530 1540 1550 1560] [ . . . . . .] A_genome AAAAAAGAAGCTCGTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1554] B_genome AAAAAAGAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1554] C_genome AAAAAAGAAGCTTTTATTAATATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1560] D_genome AAAAAAGAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1560] E_genome AAAAAAGAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1554] G_genome AAAAAAGAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGTTTTTTCTTATCCT [1560] G_genome AAAAAAGAAGCTTTTATTAATATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1560] Gossyp.kirkii AAAAAAAAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1560] Kokia.drynar AAAAAAGAAGCTCTTATTACTATTACGAATTTTGGCTACAAGAAGGCTTTTTCTTATCCT [1560] [ 1570 1580 1590 1600 1610 1620] [ . . . . . .] A_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1614] B_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1614] C_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] D_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] E_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATACTGCTTCTATTTACTTTATTT [1614] G_genome CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] G_genome TATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] Gossyp.kirkii CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] Kokia.drynar CATGAATCAGATAATACTATGCTATTTCCTATGCTTATATTGCTTCTATTTACTTTATTT [1620] [ 1630 1640 1650 1660 1670 1680] [ . . . . . .] A_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCCAAA [1674] B_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1674] C_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] D_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] E_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCCAAA [1674] G_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] G_genome GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] Gossyp.kirkii GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] Kokia.drynar GTTGGAGCTATAGCAATTCCTTTTAATCAAGAAGGAATGCATTTGGATATATTATCAAAA [1680] [ 1690 1700 1710 1720 1730 1740] [ . . . . . .] A_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1734] B_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1734] C_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] D_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] E_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1734] G_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] G_genome TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] Gossyp.kirkii TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] Kokia.drynar TTATTAACTCCATCTATAAATCTTTTACATCAAAATTCAAATGATTTTGAGGATTCGTAT [1740] [ 1750 1760 1770 1780 1790 1800] [ . . . . . .] A_genome CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1794] B_genome CAATTTTTAAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1794] C_genome CAATTTTTCAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1800] D_genome CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1800] E_genome CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1794] G_genome CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1800] G_genome CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1800] Gossyp.kirkii CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTCGGAATATTTACAGCA [1800] Kokia.drynar CAATTTTTTAAAAATGCAACTTTTTCAGTGAGTATAGCTTGTTTGGGAATATTTACAGCA [1800] [ 1810 1820 1830 1840 1850 1860] [ . . . . . .] A_genome TTCCTTTTATATAAACCTTTTTATTCATCTGTACAAAATTTAAACTTACTAAATTCATTT [1854] B_genome TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTAAACTTACTAAATTCATTT [1854] C_genome TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTAAACTTACTAAATTCATTT [1860] D_genome TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTTAACTTTCTAAATTCATTT [1860] E_genome TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTAAACTTACTAAATTCATTT [1854] G_genome TTCCTTTTATATAAACCTTTTTATTCATCTGTACAAAATTTAAACTTACTAAATTCATTT [1860] G_genome TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTAAACTTACTAAATTCATTT [1860] Gossyp.kirkii TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTGAACTTACTAAATTCATTT [1860] Kokia.drynar TTCCTTTTATATAAACCTTTTTATTCATCTTTACAAAATTTGAACTTACTAAATTCATTT [1860] [ 1870 1880 1890 1900 1910 1920] [ . . . . . .] A_genome GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1914] B_genome GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1914] C_genome GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1920] D_genome GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTTATATATGATTGG [1920] E_genome GTGAAAAGGGGTCCTAAAAGGATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1914] G_genome GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1920] G_genome GTTAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATATTTGATATATGATTGG [1920] Gossyp.kirkii GTGAAAAGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATACTTGATATATGATTGG [1920] Kokia.drynar GCGAAAGGGGGTCCTAAAAGAATTTTATTGGATAAAATGATATACTTGATATATGATTGG [1920] [ 1930 1940 1950 1960 1970 1980] [ . . . . . .] A_genome TCATATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1974] B_genome TCATATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1974] C_genome TCATATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1980] D_genome TCATATAATCGTGGTTACATAGATCTGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1980] E_genome TCGTATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1974] G_genome TCATATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGGATAAGA [1980] G_genome TCATATAATCGTGGTTACATAGATATGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1980] Gossyp.kirkii TCATATAATCGTGGTTACATAGATACGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1980] Kokia.drynar TCATATAATCGTGGTTACATAGATACGTTTTATTCAATATCCTTAACAAAAGGTATAAGA [1980] [ 1990 2000 2010 2020 2030 2040] [ . . . . . .] A_genome GGATTGGCCGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAATGGA [2034] B_genome GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAACGGA [2034] C_genome GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAACGGA [2040] D_genome GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAACGGA [2040] E_genome GGATTGGCCGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAACGCA [2034] G_genome GGATTGGCCGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAATGGA [2040] G_genome GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAACGGA [2040] Gossyp.kirkii GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAATGGA [2040] Kokia.drynar GGATTGGCAGAACTAACTCATTTTTTTGATAGGCGAGTAATCGATGGAATTACAAATGGA [2040] [ 2050 2060 2070 2080 2090 2100] [ . . . . . .] A_genome GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2094] B_genome GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2094] C_genome GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2100] D_genome GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2100] E_genome GTAGGCATTACAAGTTTTTTTGTG?????????????????????????AATAACTATAG [2094] G_genome GTAGGCATTACAAGTTTTTTTGTG????????????CACAGTATAAGCTAATAACTATAG [2100] G_genome GTAGGCAT????????????????AAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2100] Gossyp.kirkii GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCAGAGTATAAGCTAATAACTATAG [2100] Kokia.drynar GTAGGCATTACAAGTTTTTTTGTGAAATGGGCGGACCACAGTATAAGCTAATAACTATAG [2100] [ 2110 2120 2130 2140 2150 2160] [ . . . . . .] A_genome CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2154] B_genome CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2154] C_genome CACTAAGAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] D_genome CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] E_genome CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2154] G_genome CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] G_genome CACTAAGAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] Gossyp.kirkii CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] Kokia.drynar CACTAATAACCAACTCATCGCTTCGGATTATCTGGATCCAAAGAATCAGTCAAGATATGA [2160] [ 2170 2180 2190 2200 2210 2220] [ . . . . . .] A_genome TATATTGGTCATATCATTATAGCAACTGAATTTTTTTT-GCATTAAGTAAAAGACAAAAC [2213] B_genome TATATTGGTCATATCATTATAGCAACTGAATCTTTTTT-GCATTAAGGAAAAGACAAAAC [2213] C_genome TATATTGATCATATCATTATAGCAACTGAATTTTTTT--GCATTAAGTAAAAGACAAAAC [2218] D_genome TATATTGGTCATATCATTATAGCAACTGAATTTTTTTT-GCATTAAGTAAAAGACAAAAC [2219] E_genome TATATTGGTCATATCATTATAGCAACTGAATTTTTTTTTGCATTAAGTAAAAGACAAAAC [2214] G_genome TATATTGGTCATATCATTATAGCAACTGAATTTTTTTT-GCATTAAGTAAAAGACAAAAC [2219] G_genome TATATTGGTCATATCATTATAGCAACTGAATTTTTTT--GCATTAAGTAAAAGACAAAAC [2218] Gossyp.kirkii TATCTTGGTCATATCATTATAGCAACTGAATTTTTTTT-GCATTAAGTAAAAGACAAAAC [2219] Kokia.drynar TATCTTGGTCATATCATTATAGCAACTGAATTTTTTTT-GCATTAAGTAAAAGACAAAAC [2219] [ 2230 2240 2250 2260 2270 2280] [ . . . . . .] A_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2273] B_genome CAATCTGATTATGAATAGATCGAA-----GAAGCAAAATAAAAAGTATGTGGATAAATAG [2268] C_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2278] D_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2279] E_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2274] G_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2279] G_genome CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2278] Gossyp.kirkii CAATCTGATTATGAATAGATCGAAATTGTGAAGCAAAATAAAAAGTATGTGGATAAATAG [2279] Kokia.drynar CAATCCGATTATGAATAGATCGAAATTGGGAAGCAAAATAAAAAGTATGTGGATAAATAG [2279] [ 2290 2300 2310 2320 2330 2340] [ . . . . . .] A_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2333] B_genome AAGGATGAGAGAAAGAGAGAACCAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2328] C_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTC-AATATGT [2337] D_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGACATAGGATTCCAATATGT [2339] E_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2334] G_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2339] G_genome AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTC-AATATGT [2337] Gossyp.kirkii AAGGATGAGAGAAAGCGAGAAACAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2339] Kokia.drynar AAGGATGAGAGAAAGAGAGAAACAGAAATAGCAATGAAATGATATAGGATTCCAATATGT [2339] [ 2350 2360 2370 2380 2390 2400] [ . . . . . .] A_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2392] B_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2387] C_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2396] D_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2398] E_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2393] G_genome AAGGTCTATGAAGCATCTCATAAAGAGCATATGTAATAGAGCATCAATAGAGATTCATCA [2399] G_genome AAGGTCTATGAAGCATCTCATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2396] Gossyp.kirkii AAGGTCTATGAAGCATCTAATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2398] Kokia.drynar AAGGTCTATGAAGCATCTAATAAAGAGCA-ATGTAATAGAGCATCAATAGAGATTCATCA [2398] [ 2410 2420 2430 2440 2450 2460] [ . . . . . .] A_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2452] B_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2447] C_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2456] D_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2458] E_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2453] G_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2459] G_genome ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2456] Gossyp.kirkii ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2458] Kokia.drynar ATAATTAGATGAATATCTGTTCATTGAAGAAAAAATCAAGAGCCTTAACTTAAGTCAATA [2458] [ 2470 2480 2490 2500 2510 2520] [ . . . . . .] A_genome AAGACTGAGAAGGTTGACTCAAGAAAGAAATTTT-ATTT-----TTA-----------TT [2495] B_genome AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTT-ATTT-----TTA-----------TT [2489] C_genome AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTT-ATTT-----TTA-----------TT [2498] D_genome AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTT-ATTT-----TTA-----------TT [2500] E_genome AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTT-ATTT-----TTA-----------TT [2495] G_genome AAGACTGAGAAGGTTGACTCAAGAA-GAAATTT-CATTT-----TT------------TT [2500] G_genome AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTTTATTT-----TTA-----------TT [2499] Gossyp.kirkii AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTT-ATTTCATTTTAA-----------TT [2505] Kokia.drynar AAGACTGAGAAGGTTGACTCAAGAAC-AAATTTG-ATTTCATTTTTATTTCATTTTTATT [2516] [ 2530 2540 2550 2560 2570 2580] [ . . . . . .] A_genome TTATTAAATAAATATTAAAT-TAAAAAATTAAATTAAT-------------AAATATTA- [2540] B_genome TTATTAAATAAATAG------------------------------------AAATATAAA [2513] C_genome TTATTAAATAAATAGT-----------------------------------AAAATTTAA [2523] D_genome TTATTAAATAAATAG-------------------------------------------AA [2517] E_genome TTATTAAATAAATAG-------------------------------------------AA [2512] G_genome TTATTAAATAAATATTAAAT-TA----------------------------AAATATTAA [2531] G_genome TTATTAAATAAATAGAAA------------------------------------------ [2517] Gossyp.kirkii TTATTAAATAAATAGTA----------------------------------AAAAAATAA [2531] Kokia.drynar TTATTAAATAAATATTAAATATTAAATATTAAATATTAAATATTAAATATTAAATATTAA [2576] [ 2590 2600 2610 2620 2630 2640] [ . . . . . .] A_genome ---ATAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2597] B_genome AT-TTAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2572] C_genome ATTTTATATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2583] D_genome ATATTAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2577] E_genome ATATAAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2572] G_genome ATTAAAAATGAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2591] G_genome ---TTAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2574] Gossyp.kirkii ATATTAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2591] Kokia.drynar ATATTAAATTAAGGCTCCATTGGAGAATTCAGACCTAAGCATTAATCGAGAGCGATGGGG [2636] [ 2650 2660 2670 2680 2690 2700] [ . . . . . .] A_genome ACGACGGAACCCGTGAATGCAGAG-ATTCTAT-------TGAAAACGAATCCTAATGATT [2649] B_genome ACGACGGAACCCGTGAATGCGGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2625] C_genome ACGACGGAACCCGTGAATGCGGAGGATTCTATTGAAAACTGAAAACGAATCCTAATGATT [2643] D_genome ACGACGGAACCCGTGAATGCGGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2630] E_genome ACGACGGAACCCGTGAATGCGGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2625] G_genome ACGACGGAACCCGTGAATGCGGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2644] G_genome ACGACGGAACCCGTGAATGCGGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2627] Gossyp.kirkii ACGACGGAACCCGTGAATGCAGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2644] Kokia.drynar ACGACGGAACCCGTGAATGCAGAGGATTCTAT-------TGAAAACGAATCCTAATGATT [2689] [ 2710 2720 2730 2740 2750 2760] [ . . . . . .] A_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2709] B_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2685] C_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2703] D_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2690] E_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2685] G_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2704] G_genome TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATTTCTTTTTATTCTGATTCTG [2687] Gossyp.kirkii TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATCTCTTTTTATTCTGATTCTG [2704] Kokia.drynar TATCGGGGAGGATGGCGGAACAAACCAGAGACCACTGCATCTCTTTTTATTCTGATTCTG [2749] [ 2770 2780 2790 2800 2810 2820] [ . . . . . .] A_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2769] B_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2745] C_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2763] D_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2750] E_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2745] G_genome AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2764] G_genome AGAGGTTATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2747] Gossyp.kirkii AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2764] Kokia.drynar AGAGGTCATGGGTTAACCCGACAACTGAACTAGAAAAAGAGTAAATATTCGCCCGCGAAA [2809] [ 2830 2840 2850 2860 2870 2880] [ . . . . . .] A_genome ATTTGAGTTTAATT-----TGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2824] B_genome ATTTGAGTTTAATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2805] C_genome ATTTGAGTTTAATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2823] D_genome ATTTGAGTTTAATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2810] E_genome ATTTGAGTTTCATTTTATTTGATTGGTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2805] G_genome ATTTGAGTTTAATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2824] G_genome ATTTGAGTTTAATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2807] Gossyp.kirkii ATTTGAGTT-AATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2823] Kokia.drynar ATTTGAGTT-AATTTTATTTGATTGTTCAATTTTTGTCGATCTGAATCTGATATGAATAT [2868] [ 2890 2900 2910 2920 2930 2940] [ . . . . . .] A_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2884] B_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2865] C_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2883] D_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2870] E_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2865] G_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2884] G_genome GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAACCAAGATAAGACATTAT [2867] Gossyp.kirkii GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAAGCAAGATAAAACATTAT [2883] Kokia.drynar GATAAAAAACAAAATAAAGATTCGTTATAACATTATAACAAAAGCAAGATAAAACATTAT [2928] [ 2950 2960 2970 2980 2990 3000] [ . . . . . .] A_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACTTATATATATATCCAATAGATCCAAAC [2944] B_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACT--TATATATATCCAATAGATCCAAAC [2923] C_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACT----TATATATCCAATAGATCCAAAC [2939] D_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACT--TATATATATCCAATAGATCC?AAC [2928] E_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATATTTATATATATATCCAATAGATCCAAAC [2925] G_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACTTATATATATATCCAATAGATCCAAAC [2944] G_genome CTAGAAATAGAATCCGTGTTTAATTCCTTATACT----TATATATCCAATAGATCCAAAC [2923] Gossyp.kirkii CTAGAAATAGAATCCGTGTTTAATTCC------TTATATATATATCCAATATATCCAAAC [2937] Kokia.drynar CTAGAAATAGAATCCGAGTTTAATTCC------TTATATATATATCCAATATATCCAAAC [2982] [ 3010 3020 3030 3040 3050 3060] [ . . . . . .] A_genome AAGATATACAAATTTCTAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [3004] B_genome AAGATATACAAATTTCTAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [2983] C_genome AAGACATACAAATTTATAATAGATCAGATAAAATCGCAAAGCAAAGAATCCAAAGATTCA [2999] D_genome AAGATATACAAATTTCTAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [2988] E_genome AAGATATACAAATTTATAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [2985] G_genome AAGATATACAAATTTCTAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [3004] G_genome AAGATATACAAATTTATAATAGATCAGATAAAATCGCAAAGCAAAGAATCCCAAGATTCA [2983] Gossyp.kirkii AAGATAGACAAATTTCTAATAGATCAGATAAAATCTCAAAGCAAAGAATCCCAAGATTCT [2997] Kokia.drynar AAGATATACAAATTTCTAATAGATCAGATAAAATCTCAAAGCAAAGAATCCCAAGATTCT [3042] [ 3070 3080 3090 3100 3110 3120] [ . . . . . .] A_genome ATTATTCATTAACTACCCGTATATCTTAAGATTAAGAATTAAATATTTTTTTATTCATTT [3064] B_genome ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATTAAATATTTTTTTAGTCATTT [3043] C_genome ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATTAAATATTTTTTTAGTCATTT [3059] D_genome ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATTAAATATTTTTTTAGTCATTT [3048] E_genome ATTATTCATT------CTGTATATCTTAAGATTAAGAATTAAATATTTTTTTATTCATTT [3039] G_genome ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATTAAATATTTTTTTATTCATTT [3064] G_genome ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATTAAATATTTTTTTAGTCATTT [3043] Gossyp.kirkii ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATAAAATATTTTTTTAGTCATTT [3057] Kokia.drynar ATTATTCATTAACTACCTGTATATCTTAAGATTAAGAATAAAATATTTTTTTAGTCATTT [3102] [ 3130 3140 3150 3160 3170 3180] [ . . . . . .] A_genome TTTTTTT-CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3123] B_genome TTTTTT--CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3101] C_genome TTTTTT--CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3117] D_genome TTTTTTTTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3108] E_genome TTTTTTT-CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3098] G_genome TTTTT---CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3121] G_genome TTTTT---CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3100] Gossyp.kirkii TTTTTT--CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3115] Kokia.drynar TTTTTTT-CGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGAT [3161] [ 3190 3200 3210 3220 3230 3240] [ . . . . . .] A_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTGGTATCCATA [3183] B_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTTGTATCCATA [3161] C_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTTGTATCCATA [3177] D_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTGGTATTCATA [3168] E_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTGGTATCCATA [3158] G_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTGGTATCCATA [3181] G_genome GGAATTCATAAACAACAACCATCAACTATAACCCCAAAAGATAGAAATTTTGTATCCATA [3160] Gossyp.kirkii GGAATTCATAAACAA--AC-ATCAACTATAACCCCAAAAGATAGAAATTT---------- [3162] Kokia.drynar GGAATTCATAAACAA--AC-ATCAACTATAACCCCAAAAGA??GAAATTTTGTATCCATA [3218] [ 3250 3260 3270 3280 3290 3300] [ . . . . . .] A_genome GGGATTCAGCAAACTATTAG-ATCTTATCTATT-----------AACTATCTATTAGTTA [3231] B_genome GGGATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTATCTATTAGTTA [3210] C_genome GG-ATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTATCTATTAGTTA [3225] D_genome GGGATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTATCTATTAGTTA [3217] E_genome GGGATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTGTCTATTAGTTA [3207] G_genome GGGATTCAGCAAACTATTAG-ATCTTATCTATT-----------AACTATCTATTAGTTA [3229] G_genome GGGATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTATCTATTAGTTA [3209] Gossyp.kirkii ---------------------------------AGACTCGAATTTACTATCTATTAGTTA [3189] Kokia.drynar GGGATTCAGCAAACTATTAGGATCTTATCTATT-----------AACTATCTATTAGTTA [3267] [ 3310 3320 3330 3340 3350 3360] [ . . . . . .] A_genome TTCATAATTAATATGAATTATTAATATGAATTAGAGACTCGAATTTAGAAAAACTAGAAT [3291] B_genome TTCATAATTAATATGAATTATTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3270] C_genome TT-ATAATTAATATGAATTATTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3284] D_genome TTCATAATTAATATGAATTATTAATATGAATTATAGACTCGAATTTTGA-----TAGAAT [3272] E_genome TTCATAATTAATATGAATTCTTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3267] G_genome TTCATAATTAATATGAATTAGTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3289] G_genome TTCATAATTAATATGAATTATTAATATGAATTATATACTCGAATTTAGAAAAACTATAAT [3269] Gossyp.kirkii TTCATAATTAATATGAATTATTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3249] Kokia.drynar TTCATAATTAATATGAATTATTAATATGAATTATAGACTCGAATTTAGAAAAACTAGAAT [3327] [ 3370 3380 3390 3400 3410 3420] [ . . . . . .] A_genome TTTTTCTAATTTTTAATGCCATACTTAATATAAACTTAATATAAATATA--------ACA [3343] B_genome TTTTTCTAATTTTTAATGCCATAC-----------TTAATATAAATATATAAATATAACA [3319] C_genome TTTTTTTAATTTTTAACGCCATACTTAATATAA-CTTAATATAAATATATAAATATAACA [3343] D_genome TTTTTCTAATTTTTAATGCCATAC-----------TTAATATAAATATATAAATATAACA [3321] E_genome TTTTTCTAAATTTTAATGCCATAC-----------TTAATATAAATATATAAATATAACA [3316] G_genome TTTTTATAATTTTTAATGCCATACTTAATGTAAACTTAATATAAATATATAAATATAACA [3349] G_genome TTTTTCTAATTTTTAACGCCATAC-----------TTAATATAAATATATAAATATAACA [3318] Gossyp.kirkii TATTTTTAATTTTTAATGCCA---------------TAATATAATTATA--------ACA [3286] Kokia.drynar TATTTCTAATTTTGAATGCCATAC-----------TTAATATAAATATA--------ACA [3368] [ 3430 3440 3450 3460 3470 3480] [ . . . . . .] A_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3398] B_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3374] C_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3398] D_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3376] E_genome TATTAAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3371] G_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3404] G_genome TATTTAATATAATA-----ATGGTAGATTCAATCTAATATTCAAGCTAATGTTAATAGAA [3373] Gossyp.kirkii TATTTAATATAATATAATAATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATCGAA [3346] Kokia.drynar TATTTAATATAATATAATAATGGTAGATTCAATCTAATATTCAAGCTAATGTTGATAGAA [3428] [ 3490 3500 3510 3520 3530 3540] [ . . . . . .] A_genome TCTAATA------------------CGATTTAAATT------------------------ [3416] B_genome TCTAATAATTAAGAATATAATAATTCTATTTAATTT------------------------ [3410] C_genome TCTAATAATTAAGAATATAATAATTCTATTT----------------------------- [3429] D_genome TCTAATAATTAAGAATATAATAATTCGATTTTAATTT----------------------- [3413] E_genome TCTAATAATTAAGAATATAATAATTTGATTTCATTT------------------------ [3407] G_genome TCTAATAATTA------TAATAATTCGATTTAAATT------------------------ [3434] G_genome TCTAATAATTAAGAATATAATAATTCTATTTAAATT------------------------ [3409] Gossyp.kirkii TCTAATAGTATAG-----AATAATTCTATTTAATTTTATTTGATTATATTTTAATCATAT [3401] Kokia.drynar TCTAATAATATAG-----AATAATTCTATTTAATTTTATT-------------------- [3463] [ 3550 3560 3570 3580 3590 3600] [ . . . . . .] A_genome ------------------------------------------------------------ [3416] B_genome ------------------------------------------------------------ [3410] C_genome ------------------------------------------------------------ [3429] D_genome ------------------------------------------------------------ [3413] E_genome ------------------------------------------------------------ [3407] G_genome ------------------------------------------------------------ [3434] G_genome ------------------------------------------------------------ [3409] Gossyp.kirkii TAAAAATTAGATTTTAATTTAAACATAATATAATATATTATTAATAATATATAATATTAT [3461] Kokia.drynar ------------------------------------------------------------ [3463] [ 3610 3620 3630 3640 3650 3660] [ . . . . . .] A_genome ----------------------------------------------------AAAA---- [3420] B_genome ------------------------------------------------------------ [3410] C_genome ------------------------------------------------------------ [3429] D_genome ------------------------------------------------------------ [3413] E_genome ------------------------------------------------------------ [3407] G_genome ----------------------------------------------------AAAAA--- [3439] G_genome ------------------------------------------------------------ [3409] Gossyp.kirkii AATTTTTAATTATAAATATAAAAATTCATTATCATTATATTATAATAATATTATAAA--T [3519] Kokia.drynar ------------------------------------------------------------ [3463] [ 3670 3680 3690 3700 3710 3720] [ . . . . . .] A_genome -------TTTTATATATATATTTATTATTTATCTATATATTTTATATATTTA---ATATA [3470] B_genome -----TTTTTTATATATATATTTATTATTTATCTATATAATTTAT-TATTTATCTATATA [3464] C_genome ------------TATATATATTTATTATTTATCTA---------------------TATA [3456] D_genome --------TATATATATATATTTATTATTTATCTA---------------------TATA [3444] E_genome -----TTTTTTATATATATATTTATTATTTCTCTA---------------------TATA [3441] G_genome --------TTTATATATATATTTATTATTTATCTA---------------------TATA [3470] G_genome ---------------ATATATATATTATTTATCTA---------------------TATA [3433] Gossyp.kirkii TTTTTATAATATTATATATATTTATTATTTATCTA---------------------TATA [3558] Kokia.drynar ------------------------------------------------------------ [3463] [ 3730 3740 3750 3760 3770 3780] [ . . . . . .] A_genome TTTAATATCTTTTTTTATATCTTAGTTATATTTCTTTTATATTA---------------- [3514] B_genome TTTAATATCTTTTTTTATATCTTAGTTATATTTCTTTTATATTA---------------- [3508] C_genome TTTAATATCTTTTTTTATATCTTAGTTAGATTTCTTTTATATTA---------------- [3500] D_genome TTTAATATCTTTTTTTATATCTTAGTTATATTTCTTTTATATTA---------------- [3488] E_genome TTTAATATCTTTTTTTATATCTTAGTTATATTTCTTTTCTATTA---------------- [3485] G_genome TTTAATATCTTTTTTTATATCTTAGTTATATTTCTTTTATATTA---------------- [3514] G_genome TTTAATATCTTTTTTTATATCTTAGTTAGATTTCTTTTATATTA---------------- [3477] Gossyp.kirkii TTAAATATCTTTTTTTA-CTCTTAGTCGTATTTCTTTTATATTATATGTTATATTGATTT [3617] Kokia.drynar ------------------------------------------------------------ [3463] [ 3790 3800 3810 3820 3830 3840] [ . . . . . .] A_genome --------------------ATATAG-----TAATATTACTAATATTACTGACTCCATTT [3549] B_genome --------------------ATATAG-----TAATATTACTAATATTACTGACTCCATTT [3543] C_genome --------------------ATATAGTAATATAATATTACTAATATTACTGACTCCATTT [3540] D_genome --------------------ATATAGTAATATAATATTACTAATATTACTGACTCCATTT [3528] E_genome --------------------ATATAG-----TAATATTAGTAATATTACTGACTCCATTT [3520] G_genome --------------------ATATAGTAATAGAATATTACTAATATTACTGACTCCCTTT [3554] G_genome --------------------ATATAGTAATATAATATTACTAATATTACTGACTCCATTT [3517] Gossyp.kirkii TATTAGTATATTCTATATTAATATAGTAATATAATATTATTAATATTACT-ACTCCATTT [3676] Kokia.drynar ------------------------------------------------------------ [3463] [ 3850 3860 3870 3880 3890 3900] [ . . . . . .] A_genome TTATTTTCTAGTTTATTTTATATTTTAG-------TATATTTTACATCTAAATTATATAG [3602] B_genome TGATTTTCGAGTTTATTTTCTATTTTAGATTTTAGTATATTTTACATCTAAATTATATAG [3603] C_genome TTATTTTCGAGTTTATTTTATATTTTAGATTTTAGTATATTTTACATCTAAATTATATAG [3600] D_genome TGATTTTCTAGTTTATTTTATATTTTAG-------TATATTTTACATCTAAATTATATAG [3581] E_genome TTATTTTCTAGTTTATTTTCTATTTTAG-------TATATTTTACATCTAAATTATAGAG [3573] G_genome TTATTTTCTAGTTTATTTTCTATTTTAG-------TATATTTTACATCTAAATTATATAG [3607] G_genome TTATTTTCGAGTTTATTTTATATTTTAGATTTTAGTATATTTTACATCTAAATTATATAG [3577] Gossyp.kirkii TTATTTTCTAGTT-ATTTTATATTTTAG-------TATATTTTACATCTAAATTATATA- [3727] Kokia.drynar ------------------------------------------------------------ [3463] [ 3910 3920 3930 3940 3950 3960] [ . . . . . .] A_genome AAATAGAAAATTTTTTATATAGATTTCATTTAATCGATCGATTTAATAGATTTAATCTAG [3662] B_genome AAA------ATTTTTTATATAGATTTCATTTAATCGATCGATTTAATAGATTTAATATAG [3657] C_genome AAA------TTTTTTTATATAGATTTCATTTAATCGATCGATTTAATAGATTTAATATAG [3654] D_genome AAA------ATTTTTTATATAGATTTCATTTAATCGATCGATTTAATAGATTTAATATAG [3635] E_genome AAA------ATTTTTTCTATAGATTTCATTTAATCGATCGATTTAATAGATTTAATATAG [3627] G_genome AAA------ATTTTTTATATAGATTTCATTTAATCGATCGATTTAATAGATTTAATATAG [3661] G_genome AAA------ATTTTTTATATAGATTTCATTTAATGGATCGATTTAATAGATTTAATATAG [3631] Gossyp.kirkii ---------------TATATATATTTCATTTAATCCATCGATTTAATAGATTTAATATAG [3772] Kokia.drynar -----------------------TTTTATTTAATCGATCGATTTAATAGATTTAATATAG [3500] [ 3970 3980 3990 4000 4010 4020] [ . . . . . .] A_genome ATTAGATTTATTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTCAAAATCTT [3722] B_genome ATTAAATTTTTTTCTATTTAGTTTAGAGTTATAAATAGAGATAATTAGAGTCAAAATCTT [3717] C_genome ATTAAATTTTTT-CTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTCAAAATCTT [3713] D_genome ATTAAATTTATTTCTATTTAGTTTCGAGTTCTAAATAGAGATAATTAGAGTCAAAATCTT [3695] E_genome ATTAAATTTATTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTCAAAATCTT [3687] G_genome ATTAAATTTATTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTCAAAATCTT [3721] G_genome ATTAAATTTTTTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTAAAAATCTT [3691] Gossyp.kirkii ATTCAATTTATTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGAGTCAAATTTTT [3832] Kokia.drynar ATTCAATTTATTTCTATTTAGTTTAGAGTTCTAAATAGAGATAATTAGGGTCAAAATCTT [3560] [ 4030 4040 4050 4060 4070 4080] [ . . . . . .] A_genome TTTATGCAGTTATATATTTTATGATTATATAAATGA-----AACGTTATAAGTCTAGATA [3777] B_genome TTTATGCATTTATATATTTT-----TATATAAATGA-----TACGTTATAAGTCTAGATA [3767] C_genome TTTATGCATTTATATATTTTATGATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3773] D_genome TTTATGCATTTATATATTTTATGATTCTAGAAATGAAATGATACGTTATAAGTCTAGATA [3755] E_genome TTTATGCATTTATATATTTTATGATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3747] G_genome TTTATGCATTTATATATTTTATGATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3781] G_genome TTTATGCATTTATATATTTTATGATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3751] Gossyp.kirkii TTTATGCATTTATATATTTTATCATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3892] Kokia.drynar TTTATGCATTTATATATTTTATCATTATATAAATGAAATGATACGTTATAAGTCTAGATA [3620] [ 4090 4100 4110 4120 4130 4140] [ . . . . . .] A_genome ATTAGAATGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3837] B_genome ATTAGAATGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3827] C_genome ATTAGAATGAAACTCTTTTTAGACTAAAAAATTTGAATTATCTTCGAATTCGAATTCGAA [3833] D_genome ATTAGAATGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3815] E_genome ATTAGAATGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3807] G_genome ATTAGAATGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3841] G_genome ATTAGAATGAAACTCTTTTTAGACTAAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3811] Gossyp.kirkii ATTAAAATGAAACTCTTTTTAGACTTAAAAATTTGAATTATCTTCGAATTCGAAATAAAA [3952] Kokia.drynar ATTAAAAAGAAACTCTTTTTAGACTCAAAAATTTGAATTATCTTCGAATTCGAAATAGAA [3680] [ 4150 4160 4170 4180 4190 4200] [ . . . . . .] A_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATAGAAATAATTAGTTCTAGCTATTATACT [3897] B_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATACT [3887] C_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATACT [3893] D_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATACT [3875] E_genome ATGAATGG---------------------------AATAATTAGTTCTAGCTATTATACT [3840] G_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATACT [3901] G_genome ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATACT [3871] Gossyp.kirkii ATGAATGGAATAATTAGTTCTAGTTATTAAATATAAATAATTAGTTCTAGCTATTATGCT [4012] Kokia.drynar ATGAATGGAATAATTAGTTCTAGTTATTAAATAGAAATAATTAGTTCTAGCTATTATACT [3740] [ 4210 4220 4230 4240 4250 4260] [ . . . . . .] A_genome ATAAAAAAAAA-TAATTAATTT-----------CATTTTCATTTTTA-ATAATGAATAAA [3944] B_genome ATAAAAAAAAA-TAATTAATTT-----------CATTTTCATTTTTA-ATAATGAATAAA [3934] C_genome ATAAAAAA----TAATTAATTT-----------CATTTTAATTTTTA-ATAATGAATAAA [3937] D_genome ATAAAAAAAA--TAATTTATTT-----------CATTTTTAATTTTA-ATAATGAATAAA [3921] E_genome ATAAAAAAAAAATAATTAATTT-----------CATTTTCATTTTTA-ATAATGAAAAAA [3888] G_genome ATAAAAAAAAA-TAATTAATTT-----------CATTTTCATTTTTAATTAATGAATAAA [3949] G_genome ATAAAAAAAA--TAATTAATTT-----------CATTTTTATT----------------- [3901] Gossyp.kirkii ATAAAAAAA---TAATTAATTT------------AATTTTA----AATATAATAAATAAA [4053] Kokia.drynar ATAAAAAAAA--TAATTAATTAAAAAAAATAATTAATTTCATTTTAA--TAATGAATAAA [3796] [ 4270 4280 4290 4300 4310 4320] [ . . . . . .] A_genome TTCAATTTTCATTTTTATTTTTTTAGTTAT-----------TATGGTTATATAGGATAGT [3993] B_genome TTAAATTTTCATTTTTATTTTTTTAGTTATCT------TATTATGGTTATATAGGATAGT [3988] C_genome TTAAATTTTCATTTTTATTTTTT-AGTTATCTTATTCTTATTATGGTTATATAGAATAGT [3996] D_genome TTCAATTTTCATTTTGATTTTTTTAGTTATCTTATTCTTATTATGGTTATATAGGATGGT [3981] E_genome TTCAATTTTCATTTTTATTTTTTTAGGTATCTTATTCTTATTATGGTTATATAGGATAGT [3948] G_genome TTCAATTTTCATTTTTATTTTTTTAGTTATCTTATTCTTATTATGGTTATATAGGATAGT [4009] G_genome -----------------TTTTTTTAGTTATCTTATTCTTATTATGGTTATATAGGATAGT [3944] Gossyp.kirkii TTCAATTTTTATTTTTATTGTTTTAGTTATCTTATTCTTATATAGG----ATAG-----T [4104] Kokia.drynar TTAAATTTTCATTTTTATTTTTTTAGTTATCTTATTCTTATTATGGTTATATAGGATAGT [3856] [ 4330 4340 4350 4360 4370 4380] [ . . . . . .] A_genome CTAATAA----------TAAGAATAAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [4043] B_genome CTAATAAAA-----GGATAAGAATAAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [4043] C_genome CTAATAAAA-----GGATAAGAATAAAAATTAAATTAAAGAAAAAAAGATGCAACCCATA [4051] D_genome CTAATAAAAGGAAAGGATAAGAATCAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [4041] E_genome CTAATAAAA-----GGATAAGAATAAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [4003] G_genome CTAATAAAA-----GGATAAGAATAAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [4064] G_genome CTAATAAAA-----GGATAAGAATAAAAATTAAATTAAAGAAAAAAAGATGCAACCCATA [3999] Gossyp.kirkii CTAATAAAA-----GGATAAGAATAAAAATGAAATTAAAGAAAAAAAGATTCAACCCATA [4159] Kokia.drynar CTAATAAAA-----GGATAAGAATAAAAATGAAATTAAAGAAAAAAAGATGCAACCCATA [3911] [ 4390 4400 4410 4420 4430 4440] [ . . . . . .] A_genome GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAG [4103] B_genome GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAAACAG [4103] C_genome GAAATGAAATCCATATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAG [4111] D_genome GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACCG [4101] E_genome GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAG [4063] G_genome GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAG [4124] G_genome TAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAG [4059] Gossyp.kirkii GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAA [4219] Kokia.drynar GAAATGAAATCCAGATCATAATGAGAGACTCCTTTCTTTTGTTTTCATTCATAAAGACAA [3971] [ 4450 4460 4470 4480 4490 4500] [ . . . . . .] A_genome AAGCTAAGACGAAAAAAAGAATCGACCCTTCGAGTATTCCACCAAATTGCCTGAGGAAAC [4163] B_genome AAGCTAAGACGAAAAAAAGAATCGACCGTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4163] C_genome AAGCTAAGACGAAAAAAAGAATCGACCGTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4171] D_genome AAGCTAAGACGAAAAAAAGAATCGACCCTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4161] E_genome AAGCTAAGACGAAAAAAAGAATCGACCCTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4123] G_genome AAGCTAAGACGAAAAAAAGAATCGACCCTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4184] G_genome AAGCTAAGACGAAAAAAAGAATCGACCGTTCGAGTATTCCACCAAATTGCCTGAGAAAAC [4119] Gossyp.kirkii AAGCTAAGACGAAAAAAAAAATCGACCGTTCGAATATTCCACCAAATTGTCTGAGAAAAC [4279] Kokia.drynar AAGCTAAGACGAAAAAAAGAATCGACCGTTCGAGTATTCCACCAAATTGTCTGAGAAAAC [4031] [ 4510 4520 4530 4540 4550 4560] [ . . . . . .] A_genome TGAGAGTAAGAGGGACATGTATATGTTATGAAATACCCATCTATATTGAATTGCGAATAC [4223] B_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4223] C_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4231] D_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4221] E_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4183] G_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4244] G_genome TGAGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4179] Gossyp.kirkii TGGGAGTAAGAGGAACATATATATGTTATGGAATACCCATCTATATTGAATTGTGAATAC [4339] Kokia.drynar TGGGAGTAAGAGGGACATATATATGTTATGGAATACCCATCTATATTGAATTGCGAATAC [4091] [ 4570 4580 4590 4600 4610 4620] [ . . . . . .] A_genome AGAAAT-GATAAAATATTTT-----TGGACCAAATAAAAATTAATATGGGTCTCCGATAG [4277] B_genome AGAAAT-GATAAAATATTTTCTGATTGGACCAAATAAAAATGAATATGGGTCTCCGATAG [4282] C_genome AGAAAT-GATAAAATATTTTCTGATTGGACCAAATAAAAATTAATATGGGTCTCCGATAG [4290] D_genome AGAAAT-GATAAAATATTTTCCGATTGGACCAAATAAAAATTAATATGGGTCTCCGATAG [4280] E_genome AGAAAT-GATAAAATATTTTCTGATTGGACCAAATAAAAATTAATAGGGGTCTCCGATAG [4242] G_genome AGAAAT-GATAAAATATTTTCTGATTGGACCAAATAAAAATTAATATGGGTCTCCGATAG [4303] G_genome AGAAAT-GATAAAATATTTTCTGATTGGACCAAATAAAAATTAATATGGGTCTCCGATAG [4238] Gossyp.kirkii AGAAAT-AGTAAAATATTTTCTGATTGGACCAAATAAAAATAAATATGGGTCTACGGTAG [4398] Kokia.drynar AGAAAT-GATAAAATATTTT-----TGGACCAAATAAAAATAAATATGGGTCTCCGATAG [4145] [ 4630 4640 4650 4660 4670 4680] [ . . . . . .] A_genome AGACGAAAAACGGATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4337] B_genome AGACGAAAGACG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4341] C_genome AGACGAAAGACG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4349] D_genome AGACGAAAGACG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4339] E_genome AGACGAAAGACG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4301] G_genome AGACGAAAGACGGATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4363] G_genome AGACGAAAGACG-ATAAACAGACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4297] Gossyp.kirkii AGACGAAAGATG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4457] Kokia.drynar AGACGAAAGACG-ATAAACAAACAAGAAAATAGGTAAAGACCCTTCGATATAAGAATCTG [4204] [ 4690 4700 4710 4720 4730 4740] [ . . . . . .] A_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4397] B_genome TATCTATATCTACTAAATTCAACGATTTCGCATAAAAAGAAAGCAAAT------------ [4389] C_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4409] D_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4399] E_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4361] G_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4423] G_genome TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4357] Gossyp.kirkii TATCTATATCTACTAAATTCAACGGTTTCGCAAAAAAAGAAAGCAAATAAATAAACAAAA [4517] Kokia.drynar TATCTATATCTACTAAATTCAACGGTTTCGCATAAAAAGAAAGCAAATAAATAAACGAAA [4264] [ 4750 4760 4770 4780 4790 4800] [ . . . . . .] A_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAA-----------GGAGGGAGA [4435] B_genome ------AAACAAATGAAAGAA-----------GGGGGAAAG--GGGGGAAAGGAGGGAGA [4430] C_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAA-----------GGAGGGAGA [4447] D_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAAGG-GGGGGAAAGGAGGGAGA [4447] E_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAAGT-GGGGGAAAGGAGGGAGA [4409] G_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAA-----------GGAGGGAGA [4461] G_genome GAAAATAAACAAATGAAAGAA-----------GGGGGAAA-------------------- [4386] Gossyp.kirkii GAAAATAAACAAATGAAAGAAAGTGAAAAGAGGGGGGAAA-------------------- [4557] Kokia.drynar GAAAATAAACAAATGAAAGAAGGGGGAAAGAGGGGGGAAAAAAGGGGGAA--GAGGGAGA [4322] [ 4810 4820 4830 4840 4850 4860] [ . . . . . .] A_genome AAGGGGGAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4495] B_genome AAGGGGGAAGGAGGGGCCTCGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4490] C_genome AAGGGGGAAGGAGGGACCTCGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4507] D_genome AAGGGGAAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4507] E_genome AAGGGGGAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4469] G_genome AAGGGGGAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4521] G_genome --GGGGGAAGGAGGGGCCTCGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4444] Gossyp.kirkii AAGGGGGAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4617] Kokia.drynar AAGGGGGAAGGAGGGGCCTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCA [4382] [ 4870 4880 4890 4900 4910 4920] [ . . . . . .] A_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGGGGATGGAAAAAAGA [4555] B_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4550] C_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4567] D_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4567] E_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4529] G_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGGGGATGGAAAAAAGA [4581] G_genome GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4504] Gossyp.kirkii GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4677] Kokia.drynar GACCATCGGTAGAGTTTGTAAGACCACGACTGATCCTGAAAGGAGTGGATGGAAAAAAGA [4442] [ 4930 4940 4950 4960 4970 4980] [ . . . . . .] A_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCC-------- [4607] B_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCCCAAAAAAA [4610] C_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCCAAAAAAAA [4627] D_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCCAAAAAAAA [4627] E_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCCAAAAAAA- [4588] G_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTTTCCGGATCATTCCAAAAAAAA [4641] G_genome GCATGTCGTAGCAATGGAGAATTCTAAGAATCCTTTTTT-CCGGATCATTCCAAAAAAAA [4563] Gossyp.kirkii GCATGTCGTATCAATGGAGAATTCTAAGAATCCTTTTTT-CCGGATCATTCCAAAAAAA- [4735] Kokia.drynar GCATGTCGTATCAATGGAGAATTCTAAGAATCCTTTTTT-CCGGATCATTCCAAAAAAA- [4500] [ 4990 5000 5010 5020 5030 5040] [ . . . . . .] A_genome -CGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4666] B_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4670] C_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATTAATTGAATTCAAAGTTGGGTCGAG [4687] D_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4687] E_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAA-TGAATTGAATTCAAAGTTGGGTCGAG [4647] G_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4701] G_genome CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATTAATTGAATTCAAAGTTGGGTCGAG [4623] Gossyp.kirkii CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4795] Kokia.drynar CCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGAATTCAAAGTTGGGTCGAG [4560] [ 5050 5060 5070 5080 5090 5100] [ . . . . . .] A_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGGAACGAGCTTC [4726] B_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGTAACGAGCTTC [4730] C_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGTAACGAGCTTC [4747] D_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGTAACGAGCTTC [4747] E_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGGAACGAGCTTC [4707] G_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGGAACGAGCTTC [4761] G_genome TGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGTAACGAGCTTC [4683] Gossyp.kirkii TGAATAAATGGATAGAGCTCTACGGCCCCAATTAGAGGGAAACAAAAAGTAACGAGCTTC [4855] Kokia.drynar TGAATAAATGGATAGAGCGCTACGGCCCCAATTAGAGGGAAACAAAAAGTAACGAGCTTC [4620] [ 5110 5120 5130 5140 5150 5160] [ . . . . . .] A_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAA [4786] B_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAA [4790] C_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAG [4807] D_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAAGAAATTAGTGCCTAA [4807] E_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAAGAAATTAGTGCCTAA [4767] G_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAA [4821] G_genome TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAG [4743] Gossyp.kirkii TGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAA [4915] Kokia.drynar TGTTCTCAATTTGAATGATTACCCGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAA [4680] [ 5170 5180 5190 5200 5210 5220] [ . . . . . .] A_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAA------T [4840] B_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAA------T [4844] C_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAATTATTAT [4867] D_genome TGGGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCC------TTAT [4861] E_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAA------T [4821] G_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAATTATTAT [4881] G_genome TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAA---TTAT [4800] Gossyp.kirkii TGTGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAATTATTAT [4975] Kokia.drynar TGGGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAATTATTAT [4740] [ 5230 5240 5250 5260 5270 5280] [ . . . . . .] A_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4900] B_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4904] C_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4927] D_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4921] E_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4881] G_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4941] G_genome TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4860] Gossyp.kirkii TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [5035] Kokia.drynar TATTAGGCATTCCCTTTATGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAA [4800] [ 5290 5300 5310 5320 5330 5340] [ . . . . . .] A_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4959] B_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4963] C_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4986] D_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4980] E_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4940] G_genome AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [5000] G_genome AGAAAAGATATTTTTTTTCCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4920] Gossyp.kirkii AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [5094] Kokia.drynar AGAAAAGATATTTTTTT-CCAAAATCAAAAGAGCGATTGGGTTGAAAAAATAAAGGATTT [4859] [ 5350 5360 5370 5380 5390 5400] [ . . . . . .] A_genome CTAACCGTCTTCTTATCCTATAACGAACATAAATCAATTAGATGGCAAAAGA-----TAG [5014] B_genome CTAACCGTCTTCTTATCCTATAACGAACATAACTCAATTAGATGGCAAAAGA-----TAG [5018] C_genome CTAACCGTCTTCTTATCCTATAACGAACATAACTCAATTAGATGGCAAAAGA-----TAG [5041] D_genome CTAACCGTCTTCTTATCCTATAACGAACATAAATAAATTAGATGGCAAAAGAAAAGATAG [5040] E_genome CTAACCGTCTTCTTATCCTATAACGAACATAAATCAATTCGATGGCAAAAGA-----TAG [4995] G_genome CTAACCGTCTTCTTATCCTATAACGAACATAAATCAATTAGATGGCAAAAGA-----TAG [5055] G_genome CTAACCGTCTTCTTATCCTATAACGAACATAACTCAATTAGATGGCAAAAGA-----TAG [4975] Gossyp.kirkii CTAACCGTCTTCTTATCCTATAACGAATATAAATCAATTAGATGGCAAAAGA-----TAG [5149] Kokia.drynar CTAACCATCTTCTTATCCTATAACGAATATAAATCAATTAGATGGCAAAAGA-----TAG [4914] [ 5410 5420 5430 5440 5450 5460] [ . . . . . .] A_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5074] B_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGG?ATCTATTCTTTTCTTACTATA [5078] C_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5101] D_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5100] E_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5055] G_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5115] G_genome GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5035] Gossyp.kirkii GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [5209] Kokia.drynar GATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTATTCTTTTCTTACTATA [4974] [ 5470 5480 5490 5500 5510 5520] [ . . . . . .] A_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5134] B_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5138] C_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCTAATAGATCCCCTATC [5161] D_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5160] E_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5115] G_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5175] G_genome ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCTAATAGATCCCCTATC [5095] Gossyp.kirkii ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5269] Kokia.drynar ATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATC [5034] [ 5530 5540 5550 5560 5570 5580] [ . . . . . .] A_genome TTTGGTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5194] B_genome TTTGGGTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5198] C_genome TTTGGGTCAAATCGAATTTGAAATGGAGGAATTTCAAGTCTATTTAGAACTAAATAGATC [5221] D_genome TTTGGTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5220] E_genome TTTGGTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5175] G_genome TTTGGTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5235] G_genome TTTGGGTCAAATCGAATTTGAAATGGAGGAATTTCAAGTCTATTTAGAACTAAATAGATC [5155] Gossyp.kirkii TTTGGTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATC [5329] Kokia.drynar TTTGGTTCCAATCGAATTTGAAATGGAGCAATTTCAAGTATATTTAGAACTAAATAGATC [5094] [ 5590 5600 5610 5620 5630 5640] [ . . . . . .] A_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5254] B_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5258] C_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5281] D_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5280] E_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5235] G_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5295] G_genome CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCA [5215] Gossyp.kirkii CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGGACTTGCTCA [5389] Kokia.drynar CCGCCGACACGATTTCCTATACCCACTTATTTTTCGGGAGTCTATTTATGCACTTGCTCA [5154] [ 5650 5660 5670 5680 5690 5700] [ . . . . . .] A_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5314] B_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5318] C_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5341] D_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5340] E_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5295] G_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5355] G_genome TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5275] Gossyp.kirkii TGAGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5449] Kokia.drynar TGGGCATGGTTTAAATAAATCGATGATTTTTTTTGAAAATCAGGGTTATGGTAATAAATT [5214] [ 5710 5720 5730 5740 5750 5760] [ . . . . . .] A_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5374] B_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGAGCAACAGAATCGTTTGATTAG [5378] C_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5401] D_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5400] E_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5355] G_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5415] G_genome CAGTTCACTAATTGTGAAACGTTTAATTCTTC?AATGGATCAACAGAATCGTTTGATTAG [5335] Gossyp.kirkii CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAATCGTTTGATTAG [5509] Kokia.drynar CAGTTCACTAATTGTGAAACGTTTAATTCTTCGAATGGATCAACAGAAACGTTTGATTAG [5274] [ 5770 5780 5790 5800 5810 5820] [ . . . . . .] A_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5434] B_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5438] C_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5461] D_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGACACAACAATAATTTGTATTCTCA [5460] E_genome TTCTACTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5415] G_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5475] G_genome TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5395] Gossyp.kirkii TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5569] Kokia.drynar TTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACAATAATTTGTATTCTCA [5334] [ 5830 5840 5850 5860 5870 5880] [ . . . . . .] A_genome AATGATAGCGGTAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5494] B_genome AATGATAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5498] C_genome AATGATATCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTACTTACGATTAATATC [5521] D_genome AATGATAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5520] E_genome AATGATAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5475] G_genome AATGATAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5535] G_genome AATGATAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5455] Gossyp.kirkii AATGATAGCGGCAGGGTTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5629] Kokia.drynar AATGGTAGCGGCAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATTAATATC [5394] [ 5890 5900 5910 5920 5930 5940] [ . . . . . .] A_genome TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5554] B_genome TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5558] C_genome TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5581] D_genome TTACTCACAAGGGGCAGAAGCCGCAAAATCTCATAATTTTCAATCAATTCATTCAATATT [5580] E_genome TTACTCACAAGGAACAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5535] G_genome TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5595] G_genome TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5515] Gossyp.kirkii TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5689] Kokia.drynar TTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATT [5454] [ 5950 5960 5970 5980 5990 6000] [ . . . . . .] A_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5614] B_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5618] C_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5641] D_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5640] E_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5595] G_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5655] G_genome TCCTTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5575] Gossyp.kirkii TCCTTTTTTAGAGGACAAATTATCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5749] Kokia.drynar TCCCTTTTTAGAGGACAAATTATCACATTTAAATTATGTGTTAGAGGCACTAATACCTCA [5514] [ 6010 6020 6030 6040 6050 6060] [ . . . . . .] A_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5674] B_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5678] C_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5701] D_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5700] E_genome TCCTATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5655] G_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5715] G_genome TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5635] Gossyp.kirkii TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5809] Kokia.drynar TCCCATCCATCTAGAAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTC [5574] [ 6070 6080 6090 6100 6110 6120] [ . . . . . .] A_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5734] B_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5738] C_genome TTTACATTTATTACGG?TCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5761] D_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5760] E_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5715] G_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5775] G_genome TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5695] Gossyp.kirkii TTTGCATTTATTACGG?TCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5869] Kokia.drynar TTTGCATTTATTACGGTTCTCTCTCTACGAGTATTGTAATTTGAAGAGTTTTATTACTCC [5634] [ 6130 6140 6150 6160 6170 6180] [ . . . . . .] A_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATAC [5794] B_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATAC [5798] C_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTCTTCCTATATAATTCTCATAC [5821] D_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTGTATAATTCTCATAC [5820] E_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATAC [5775] G_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATAC [5835] G_genome AAAGAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATAC [5755] Gossyp.kirkii AAAAAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATGC [5929] Kokia.drynar AAAAAAATCTATTTCGATTTTTAATCCAAGATTATTCTTGTTCCTATATAATTCTCATGC [5694] [ 6190 6200 6210 6220 6230 6240] [ . . . . . .] A_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5854] B_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5858] C_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5881] D_genome ATGTGAATACGAATCTATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5880] E_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5835] G_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5895] G_genome ATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5815] Gossyp.kirkii ATGTGAATACGAATTCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5989] Kokia.drynar ATGTGAATACGAATTCATTTTCCTTTTTCTCCGTAATCAATCTTCTCATTTACGATCAAC [5754] [ 6250 6260 6270 6280 6290 6300] [ . . . . . .] A_genome ATCTTCTGGGGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5914] B_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5918] C_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5941] D_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5940] E_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5895] G_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5955] G_genome ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5875] Gossyp.kirkii ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [6049] Kokia.drynar ATCTTCTGGAGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCTTGGCGA [5814] [ 6310 6320 6330 6340 6350 6360] [ . . . . . .] A_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [5974] B_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [5978] C_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [6001] D_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [6000] E_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [5955] G_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [6015] G_genome AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [5935] Gossyp.kirkii AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [6109] Kokia.drynar AGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTT [5874] [ 6370 6380 6390 6400 6410 6420] [ . . . . . .] A_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [6034] B_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCACTAA [6038] C_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTGTGATCAATAA [6061] D_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [6060] E_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [6015] G_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [6075] G_genome TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [5995] Gossyp.kirkii TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [6169] Kokia.drynar TATTAGGTATCAAGGAAAGTCAATTCTGGCCTCAAAGGATACGTCTCTTCTGATCAATAA [5934] [ 6430 6440 6450 6460 6470 6480] [ . . . . . .] A_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6094] B_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6098] C_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6121] D_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6120] E_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6075] G_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6135] G_genome GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6055] Gossyp.kirkii GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [6229] Kokia.drynar GTGGAAATATTACTTTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGG [5994] [ 6490 6500 6510 6520 6530 6540] [ . . . . . .] A_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6154] B_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6158] C_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6181] D_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6180] E_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6135] G_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6195] G_genome AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6115] Gossyp.kirkii AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6289] Kokia.drynar AAGAGTCCGTATAAATCAATTATCTAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAG [6054] [ 6550 6560 6570 6580 6590 6600] [ . . . . . .] A_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6214] B_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6218] C_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTTATTTATAATAGA [6241] D_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6240] E_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6195] G_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6255] G_genome TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTTATTTATAATAGA [6175] Gossyp.kirkii TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6349] Kokia.drynar TGTGCGATTAAATCCTTCAGTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGA [6114] [ 6610 6620 6630 6640 6650 6660] [ . . . . . .] A_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6274] B_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6278] C_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6301] D_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGATCATTGGATCATTGTC [6300] E_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6255] G_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6315] G_genome TAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6235] Gossyp.kirkii TAATGCTATGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6409] Kokia.drynar TAATGCTATGAAGACGTTGGATACAAGAATTCCAATTATTTCGCTCATTGGATCATTGTC [6174] [ 6670 6680 6690 6700 6710 6720] [ . . . . . .] A_genome TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTC [6334] B_genome TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTC [6338] C_genome TAAGGCGAAATTTTGTAACACGTTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTC [6361] D_genome TAAGGCGAAATTTTGTAACACATTAGGGCACCCCATTAGTAAGCCGACGTGGGCCGATTC [6360] E_genome TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATCC [6315] G_genome TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTT [6375] G_genome TAAGGCAAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGACCGATTC [6295] Gossyp.kirkii TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTC [6469] Kokia.drynar TAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGCCGATTC [6234] [ 6730 6740 6750 6760 6770 6780] [ . . . . . .] A_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGGATATCCAGAAATCTTTCTCATTATCA [6394] B_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATCCAGAAATCTTTCTCATTATCA [6398] C_genome TCCCGATTCTGATATTATTGACCGATTTGCGCGTATATCCAGAAATCTTTCTCATTATCA [6421] D_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATCCAGAAATCTTTCTCATTATCA [6420] E_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATCCAGAAATCTTTCTCATTATCA [6375] G_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGGATATCCAGAAATCTTTCTCATTATCA [6435] G_genome CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATCCAGAAATCTTTCTCATTATCA [6355] Gossyp.kirkii CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATGCAGAAATCTTTCTCATTATCA [6529] Kokia.drynar CCCCGATTCTGATATTATTGACCGATTTGTGCGTATATGCAGAAATCTTTCTCATTATCA [6294] [ 6790 6800 6810 6820 6830 6840] [ . . . . . .] A_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6454] B_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6458] C_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6481] D_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6480] E_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6435] G_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6495] G_genome CAGTGGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGTTTTTCTTG [6415] Gossyp.kirkii CAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6589] Kokia.drynar CAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTG [6354] [ 6850 6860 6870 6880 6890 6900] [ . . . . . .] A_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6514] B_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6518] C_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6541] D_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6540] E_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTG?TTTTTTGAAAAAATTAGG [6495] G_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6555] G_genome TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGG [6475] Gossyp.kirkii TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGAAAAAATTAGG [6649] Kokia.drynar TGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGAAAAAATTAGG [6414] [ 6910 6920 6930 6940 6950 6960] [ . . . . . .] A_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGTTTTTTCTTTGAT [6574] B_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGTTTTTTCTTTGAT [6578] C_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAGGAAGAACATGTTTTTTCTTTGAT [6601] D_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGTTTTTTCTTTGAT [6600] E_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACCGAAGAAGAACATGTTTTTTCTTTGAT [6555] G_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGTTTTTTCTTTGAT [6615] G_genome TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAGGAAGAACATGTTTTTTCTTTGAT [6535] Gossyp.kirkii TTCGGAATTGTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGTTTTTTCTTTGAT [6709] Kokia.drynar TTCGGAATTTTTGGAAGAATTCTTTACGGAAACGGAAGAAGAACATGCTTTTTCTTTGAT [6474] [ 6970 6980 6990 7000 7010 7020] [ . . . . . .] A_genome CTTCCCAAGAGGTTTTTTTGCTATGCGAAAGGTCTATAGGGGACGAATTTGGTATTTGGA [6634] B_genome CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCTATAGGGGACGAATTTGGTATTTGGA [6638] C_genome CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCTATAGGGGACGAATTTGGTATTTGGA [6661] D_genome CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGGTCTATAGAGGACGAATTTGGTATTTGGA [6660] E_genome CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCTATAGGGGACGAATTTGGTATTTGGA [6615] G_genome CTTCCCAAGAGGTTTTTTTGCTATGCGAAAGGTCTATAGGGGACGAATTTGGTATTTGGA [6675] G_genome CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCTATAGGGGACGAATTTGGTATTTGGA [6595] Gossyp.kirkii CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCGATAGGGGACGAATTTGGTATTTGGA [6769] Kokia.drynar CTTCCCAAGAGGTTTTTTTGCTTTGCGAAAGTTCGATAGGGGACGAATTTGGTATTTGGA [6534] [ 7030 7040 7050 7060 7070 7080] [ . . . . . .] A_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6693] B_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6697] C_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6720] D_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6719] E_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6674] G_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6734] G_genome TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTA-TGTAAAT [6654] Gossyp.kirkii TATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTATTGTAAAT [6829] Kokia.drynar TATTATTTGTATCGATGCTCTGGTCAATCATTCATGATTGGTTATGAAATTATTGTAAAT [6594] [ 7090 7100 7110 7120 7130 7140] [ . . . . . .] A_genome TCAATTATCAATTACAATAAAAATGGTAATTTTACGAAATGATGAAGAGATAACAAACGA [6753] B_genome -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAGATAACAAACGA [6750] C_genome -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAGATAACAAACGA [6773] D_genome ------------------------------------------------------------ [6719] E_genome -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAG?TAACAAACGA [6727] G_genome TCAATTATCAATTACAATAAAAATGGTAATTTTACGAAATGATGAAGAGATAACAAACGA [6794] G_genome -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAGATAACAAACGA [6707] Gossyp.kirkii -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAGATAACAAACGA [6882] Kokia.drynar -------TCAATTACAATAAAAATGGGAATTTTCCGAAATGATGAAGAGATAACAAACGA [6647] [ 7150 7160 7170 7180 7190 7200] [ . . . . . .] A_genome ATTTATTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6813] B_genome ATTTATTCATTTCTCGTATTAAATGTTCAGGCAGTAAGAATAAGAGAGGATTGGCCGAGT [6810] C_genome ATTTATTCATTTCTCGTATTAAATGTTCAAGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6833] D_genome -----TTCAATTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6774] E_genome ATTTATTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGTGGATTGGCCGAGT [6787] G_genome ATTTATTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6854] G_genome ATTTATTCATTTCTCGTATTAAATGTTCAAGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6767] Gossyp.kirkii ATTTATTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6942] Kokia.drynar ATTTTTTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGGATTGGCCGAGT [6707] [ 7210 7220 7230 7240 7250 7260] [ . . . . . .] A_genome ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6872] B_genome ATTCCGC--TTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6868] C_genome ATTCCGCTTTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6893] D_genome ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6833] E_genome ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6846] G_genome ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6913] G_genome ATTCCGCTTTTTTTTTTAGAGTCCTGTTTAGTGAATAAACAGGGTTTTAGATGGATACAT [6827] Gossyp.kirkii ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [7001] Kokia.drynar ATTCCGC-TTTTTTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACAT [6766] [ 7270 7280 7290 7300 7310 7320] [ . . . . . .] A_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTT--TTTTT [6930] B_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6928] C_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6953] D_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6893] E_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6906] G_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGA-TTTT--TTATT [6970] G_genome AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6887] Gossyp.kirkii AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [7061] Kokia.drynar AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATTCTT [6826] [ 7330 7340 7350 7360 7370] [ . . . . .] A_genome ---CTTTT---------AAATTTCAATTTA---TTTAA-TTAAACAAGGA [6964] B_genome TAACTTTT--------TAAA-TTTA-TTT----TTT?????????????? [6964] C_genome TAACTTTA---------AAATTTTAATTTA---TTTAAATTAAACAAGGA [6991] D_genome TAACTTTAAAATT-AGTAAATTAGAATTTA---TTTAATTTAAACAAGGA [6939] E_genome TTTAATTTG????????????????????????????????????????? [6956] G_genome ---CTTTT---------AAATTTCAATTTA---TTT-AATT-AACAAGGA [7003] G_genome TAAC----------------TTTAAATTTA---TTTAAATTAAACAAGGA [6918] Gossyp.kirkii TAACTTTTTTATTAAATTTATTT-AATTTAAACTTTA-TTT????????? [7109] Kokia.drynar TAACTTTTTTATTAAATTTATTT-AATTTAAACTTTAATTTAAACAAGGA [6875]; END; [begin character partitions for Partition-Homogeneity tests] CHARPARTITION NDHFvsRPL16 = gene1:1-2064, gene2:2065-3221; CHARPARTITION TRNTLvsMATK = gene3:3222-4817, gene4:4818-7370; CHARPARTITION NDHFvsTRNTL = gene1:1-2064, gene3:3222-4817; CHARPARTITION RPL16vsTRNTL = gene2:2065-3221, gene3:3222-4817; CHARPARTITION NDHFvsMATK = gene1:1-2064, gene4:4818-7370; CHARPARTITION RPL16vsTRNTL = gene2:2065-3221, gene4:4818-7370; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 2065-5541 7051-7370, 1: 1-2062\3 5542-7048\3, 2: 2-2063\3 5543-7049\3, 3: 3-2064\3 5544-7050\3; CODESET * UNTITLED = Universal: all ; END; BEGIN SETS; CHARSET NDHF = 1-2064; CHARSET RPL16 = 2065-3221; CHARSET TRNTL = 3222-4817; CHARSET MATK = 4818-7370; CHARSET rpl16badaln = 2537-2585; CHARSET trnTLbadaln = 3519-3672; CHARSET matKbadaln = 7328-7370; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END;