[RICHARD C. CRONN, RANDALL L. SMALL, TAMARA HASELKORN, AND JONATHAN F. WENDEL. 2002. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. American Journal of Botany 89(4): 731-749] #NEXUS [Cronn et al., "Rapid diversification of the cotton genus(Gossypium:Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes] [PAUP/NEXUS Data set of 12 combined nuclear loci. Taxon abbreviations are summarized in Materials and Methods and Table 1. Gene Order = A1751 1-858; AdhA 859-1811; G1262 1812-2745; CesA1b 2746-3922; CesA1 3923-5008; AdhC 5009-5948; A1341 5949-6629; A1713 6630-7224; G1121 7225-7972; G1134 7973-8519; ITS 8520-9214; FAD2 9215-10988. Poorly aligned regions from FAD2 need to be removed prior to analysis:] these include positions 10150-10230 and 10744-10802 of the alignment, and are defined in the "CHARSET" block at the end of the file] BEGIN DATA; DIMENSIONS NTAX=9 NCHAR=10988; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;OPTIONS MSTAXA=UNCERTAIN ; MATRIX [ 10 20 30 40 50 60 70] [ . . . . . . .] A_genome T??TTCCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] B_genome TGATTCCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] C_genome ?????CCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] D_genome TGATTCCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] E_genome TGATTCCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] F_genome TGATTCGGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] G_genome TGATTCCGCC GTGGCTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] Gossyp.kirkii TGATGCCGCC GTGGTTGATG GCGTTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] Kokia.drynar TGATTCCGCC GTGGCTGATG GTATTGATGT GATTTCGTTG AGTGTTGGTG GTGCTGTGGT GCCTTATTAT [70] [ 80 90 100 110 120 130 140] [ . . . . . . .] A_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] B_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] C_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] D_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] E_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] F_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] G_genome CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] Gossyp.kirkii CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGAGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] Kokia.drynar CTTGACGCCA TTGCGATTGG TGCTTACGGT GCTGCTGGGA AAGGGATTTT TGTGTCGGCC TCTGCTGGCA [140] [ 150 160 170 180 190 200 210] [ . . . . . . .] A_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] B_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC GTGGGTGGCT ACCGTTGGCG CTGGGACGAT [210] C_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] D_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] E_genome ATGGAGGTCC TGGTGGACTG ACCGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] F_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] G_genome ATGGAGGTCC TGGTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] Gossyp.kirkii ATGGAGGTCC TGGTGGACTT ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACCGTTGGTG CTGGGACGAT [210] Kokia.drynar ATGGAGGTCC TGCTGGACTG ACTGTTACCA ATGTGGCTCC ATGGGTGGCT ACTGTTGGTG CTGGGACGAT [210] [ 220 230 240 250 260 270 280] [ . . . . . . .] A_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTGGTGA CTGGAGCGGG GGTGTACAAT [280] B_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] C_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] D_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTTTACAAT [280] E_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAATTGTGA CTGGAGCCGG GGTGTACAAT [280] F_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] G_genome TGATCGGGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] Gossyp.kirkii TGATCGTGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] Kokia.drynar TGATCGTGAT TTTCCTGCTG ATGTTAAGCT TGGAAATGGG AAAGTTGTGA CTGGAGCCGG GGTGTACAAT [280] [ 290 300 310 320 330 340 350] [ . . . . . . .] A_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] B_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] C_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] D_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GGTGGGTATT [350] E_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] F_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] G_genome GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] Gossyp.kirkii GGGCGGGGCT TGTCTCCGGG TCGGATGTAC CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] Kokia.drynar GGGCGGGGCT TGTCTCCGGG TCGGATGTAT CCGTTGGTTT ATGCCGGATC CGGTGGTGGT GATGGGTATT [350] [ 360 370 380 390 400 410 420] [ . . . . . . .] A_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] B_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] C_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] D_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT TGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] E_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] F_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT TGTGAAAGGC AAAATTGTTT TGTGTGATAG [420] G_genome CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG GTCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] Gossyp.kirkii CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] Kokia.drynar CTTCTTCTTT GTGTTTGGAA GGTTCTTTGG ATCCCGACTT CGTGAAAGGC AAAATCGTTT TGTGTGATAG [420] [ 430 440 450 460 470 480 490] [ . . . . . . .] A_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGATTGGAAT GATTTTGGCT [490] B_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] C_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] D_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] E_genome AGGTGTTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] F_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] G_genome AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCGGGAG GGGTTGGAAT GATTTTGGCT [490] Gossyp.kirkii AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTAAAG AAAGCTGGAG GAGTAGGAAT GATTTTGGCT [490] Kokia.drynar AGGGATTAAT TCCAGGGCTG CCAAAGGGGA AGTTGTGAAG AAAGCTGGAG GGGTTGGAAT GATTTTGGCT [490] [ 500 510 520 530 540 550 560] [ . . . . . . .] A_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] B_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] C_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] D_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] E_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] F_genome AATGGGGTTT TCGACGGTGA GGGCCTAGTT GTCGA?TGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] G_genome AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] Gossyp.kirkii AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] Kokia.drynar AATGGGGTTT TCGACGGTGA AGGCCTAGTT GTCGATTGCC ATGTGTTGCC AGCTACTGCT GTTGGTGCAT [560] [ 570 580 590 600 610 620 630] [ . . . . . . .] A_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCCGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] B_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCCGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] C_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCCGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] D_genome CAAATGCAGA TGAGATTAGA CAATACATTG ATTCCGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] E_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCCGCATC GAAGTCGAAA TCATCAGCCA CTGCCACTAT [630] F_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCGGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] G_genome CAAATGCAGA TGAGATTAGG CAATACATTG ATTCCGCATC GAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] Gossyp.kirkii CAAATGCAGG TGAGATTAGG CAATACATTG ATTCCGCATC TAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] Kokia.drynar CAAATGCAGA TGAGATTAGG CAATACACTG ATTCCGCAAC TAAGTCCAAA TCATCAGCCA CTGCCACTAT [630] [ 640 650 660 670 680 690 700] [ . . . . . . .] A_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCG GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] B_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] C_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] D_genome TCTCTTTAAA GGGACTCGGT TAGGTGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] E_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGGGGGCCT [700] F_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] G_genome TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] Gossyp.kirkii TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] Kokia.drynar TCTCTTTAAA GGGACTCGGT TAGGGGTGAG GCCAGCTCCT GTTGTGGCCT CATTTTCAGC TCGAGGGCCT [700] [ 710 720 730 740 750 760 770] [ . . . . . . .] A_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] B_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] C_genome AATCCCGAGA CTCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] D_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] E_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] F_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] G_genome AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] Gossyp.kirkii AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATGTGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] Kokia.drynar AATCCCGAGA CCCCAGAAAT TTTAAAGCCT GATATGATTG CTCCTGGATT GAACATCCTT GCTGCCTGGC [770] [ 780 790 800 810 820 830 840] [ . . . . . . .] A_genome CTGATAAAGT TGGTCCTGCT GGGATTCCAT CTGATAACCG AAGGACAGA? ?????????? ?????????? [840] B_genome CTGATAAGGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGGACAGAG TTTAATATTC TTTCAGGCAC [840] C_genome CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGAACAG?? ?????????? ?????????? [840] D_genome CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGGACA??? ?????????? ?????????? [840] E_genome CTGATAAAGT TGGTCCTGCC GGGATTCCAT CAGATAACCG AAGGACAGAG TTTAATATTC TTTCAGGCAC [840] F_genome CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGGACAGAG TTTAATATTC TTTCAGGCAC [840] G_genome CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGAACAGAG TTTAATATTC TTTCAGGCAC [840] Gossyp.kirkii CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGGACAGAG TTTAATATTC TTTCAGGCAC [840] Kokia.drynar CTGATAAAGT TGGTCCTGCT GGGATTCCAT CAGATAACCG AAGGACAGAG TTTAATATTC TTTCAGGCAC [840] [ 850 860 870 880 890 900 910] [ . . . . . . .] A_genome ?????????? ????????TG TAAGGTATTA CTGCACGATA AAATGAATAT TACAACATTT A-TTTTCTAC [909] B_genome TTCAATGGCT TGCCCTCATG TAAGGTATTA CTGTACGATA TAATGAATAT TACAACATTT A-TTTTCAAC [909] C_genome ?????????? ????????TG TAAGGTATTA CTGTACGATA TAATGAATAT TACAACATTT A-TTTTCTAC [909] D_genome ?????????? ????????TG TAAGGTATTA CTGTTCGATA TAATGAATAT TACAACATTT A-TTTTCTGC [909] E_genome TTCAATGGCT TGCCCTCATG TAAGGTATTA ATGTACGATA TAATGAATAT TACAACATTT TGTTTTCTAC [910] F_genome TTCAATGGCT TGCCCTCATG TAAGGTATTA CTGTACGATA TAATGAATAT TACAAAATTT A-TTTTCTAC [909] G_genome TTCAATGGCT TGCCCTCATG TAAGGTATTA CTGTACGATA TAATGAATAT TACAACATTT A-TTTTCTAC [909] Gossyp.kirkii TTCAATGGCT TGCCCTCATG TAAGGTATGA CTGTACGATA TAATGGATAT TACAACACTT A-TTTTCTAC [909] Kokia.drynar TTCAATGGCT TGCCCTCATG TAAGGTATGA CTGTACGATA TAATGGATAT TACAACACTT A-TTTTCTAC [909] [ 920 930 940 950 960 970 980] [ . . . . . . .] A_genome AAGTATTTGT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [979] B_genome AAGTATTTGT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [979] C_genome AAGTATTTGT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGAAT ACTTGGTCAT [979] D_genome AAGTATT-GT CACTGCTTTC CTTTAACTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [978] E_genome AAGTATTTGT CAGTGTTTTT ATTTAATTTG TCAGGGTTAC ACTCCTCTGT TTCCTCGAAT ACTTGGTCAT [980] F_genome AAGTATTTGT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [979] G_genome AAGTATTTGT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGAAT ACTTGGTCAT [979] Gossyp.kirkii AAGGATT-GT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [978] Kokia.drynar AAGGATT-GT CACTGTTTTT CTTTAATTTG GCAGGGTTAC ACTCCTCTGT TTCCTCGTAT ACTTGGTCAT [978] [ 990 1000 1010 1020 1030 1040 1050] [ . . . . . . .] A_genome GAAGCCTCAG GGTATGAAAG TTAAAACCAT TTTATTTTTT TATATATTTT TCTGTATCAA TATAATCTTA [1049] B_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCAT TTTATTTTTT TATATATTTT TCTGTATCAA TATAATCTTA [1048] C_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCAT TTTATTTTTT TATATATTTT TCTGTATCAA TATAATCTTA [1048] D_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCAT TTTATTTTTT -ATATATTCT TCTGTATCAA TTTAATCTTA [1046] E_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCTT TTT-TTTTTT AATATATTTT TCTGTATCAA TATAATCTTA [1048] F_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCAT TTTACTTTTT TATATATTTT TCTGTATCAA TATAATCTTA [1048] G_genome GAAGCCTCAG GGTATGAAAG TTAAA-CCAT TTTATTTTTT TATATATTTT TCTGTATCAA TATAATCTTA [1048] Gossyp.kirkii GAAGCCTCAG GGTATGGAAG TTAAA-CCAT TTTATTTTTT TATGTATTTT TCTGTATCAA AATAATCTTA [1047] Kokia.drynar GAAGCCTCAG GGTATGGAAG TTAAA-CCAT TTTATTTTTT -ATGTATTTT TCTGTATCAA AATAATCTTA [1046] [ 1060 1070 1080 1090 1100 1110 1120] [ . . . . . . .] A_genome CAATTATAAT TGTAGGATCG TGGAGAGTGT GGGTGAGGGT GTGAATGATT TGAAACCTGG GGATCATGTG [1119] B_genome CAATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGAATGATT TGAAACCTGG GGATCATGTG [1118] C_genome CAATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGAATGATT TGAAACCTGG GGATCATGTG [1118] D_genome CAATTATAAT TATAGGATCG TGGAGAGTGC GGGTGAGGGT GTGAATGATT TGAAACCTGG AGATCATGTG [1116] E_genome CAATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGC GTGAATGATT TGAAACCTGG GGATCATGTG [1118] F_genome CAATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGGATGATT TGAAACCTGG GGATCATGTG [1118] G_genome CAATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGAATGATT TGAAACCTGG GGATCATGTG [1118] Gossyp.kirkii CGATTATAAT TATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGAATGATT TGAAACCTGG AGATCATGTG [1117] Kokia.drynar CGATTATAAT CATAGGATCG TGGAGAGTGT GGGTGAGGGT GTGGATGATT TGAAACCTGG AGATCATGTG [1116] [ 1130 1140 1150 1160 1170 1180 1190] [ . . . . . . .] A_genome CTTCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1189] B_genome CTCCCTATCT TCACCGGGGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1188] C_genome CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1188] D_genome CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1186] E_genome CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1188] F_genome CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1188] G_genome CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCCACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1188] Gossyp.kirkii CTCCCTATCT TCACCGGAGA ATGCAAAGAA TGTCGCTACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1187] Kokia.drynar CTCCCAATCT TCACCGGAGA ATGCAAAGAA TGTCGCTACT GTCTGTCAGA AGAAAGCAAT AACATGTGCG [1186] [ 1200 1210 1220 1230 1240 1250 1260] [ . . . . . . .] A_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1259] B_genome AACTGCTTAG GATCAACTGT GACCGA?GTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1258] C_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1258] D_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1256] E_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1258] F_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1258] G_genome AACTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1258] Gossyp.kirkii AGCTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGGAAA ACCAGATTTT CCATCAACGG [1257] Kokia.drynar AGCTGCTTAG GATCAACTGC GACCGAGGTG TTATGCTTGC TGATGGAAAA ACCAGATTTT CCATCAACGG [1256] [ 1270 1280 1290 1300 1310 1320 1330] [ . . . . . . .] A_genome CAAGCCTATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1329] B_genome CAAGCCCATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1328] C_genome CAAGCCTATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1328] D_genome CAAGCCTATC TATCACTTTG TTGGAACCTC GACCTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1326] E_genome CAAGCCTATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1328] F_genome CAAGCCTATC TATCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1328] G_genome CAAGCCTATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1328] Gossyp.kirkii CAAGCCTATC TATCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1327] Kokia.drynar CAAGCCTATC TACCACTTTG TTGGAACCTC GACTTTTAGC CAATATACTG TCGTCCATGT TGGCCAGGTT [1326] [ 1340 1350 1360 1370 1380 1390 1400] [ . . . . . . .] A_genome GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1399] B_genome GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1398] C_genome GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACGGGTTTTG [1398] D_genome GCCAAGATCA GTCCAACGGC CCCTCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1396] E_genome GCTAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1398] F_genome GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1398] G_genome GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1398] Gossyp.kirkii GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1397] Kokia.drynar GCCAAGATCA GTCCAACCGC CCCGCTTGAT AAAGTCTGTC CCATTAGCTG TGGGATATGT ACAGGTTTTG [1396] [ 1410 1420 1430 1440 1450 1460 1470] [ . . . . . . .] A_genome GGGCCACTGT GAATGTTGCC AAACCCAAAA AGGGTCAAAC TGTTGCACTT TTTGGACTGG GTGCCGTTGG [1469] B_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1468] C_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1468] D_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1466] E_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AAGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1468] F_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1468] G_genome GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAGTT TTTGGACTGG GTGCCGTTGG [1468] Gossyp.kirkii GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC TGTTGCAATT TTTGGACTGG GTGCCGTTGG [1467] Kokia.drynar GGGCCACTGT GAATGTTGCT AAACCCAAAA AGGGTCAAAC AGTCACAGTT TTTGGACTGG GTGCCGTTGG [1466] [ 1480 1490 1500 1510 1520 1530 1540] [ . . . . . . .] A_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATGGTTTTTC TCT?GGCTAT TTGGTAAATG TGTTTGATTC [1539] B_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATAGTTTTTC TCTAGGCTAT TTGGTAAATG TGTTTGATTC [1538] C_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATGGTTTTTC TCTTGGCTAT TTGGTAAATG TGTTTGATTC [1538] D_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATGGTTTTTC TCTAGGCTAT TTGGTAAATG TGTTTGATTC [1536] E_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATGGTTTTTC TCTAGCCTAT TTGGTAAATG TGTTTGATTC [1538] F_genome TCTTGCCGTG AGTTTATTCT TGTTTCACCT ATGGTTTTTC TCTAGGCTAT TTGGTAAATG TGTTTGATTC [1538] G_genome TCTTGCCGTG AGTTTATTCT TGTTTCACTT ATTGTTTTTC TCTAGGCTAT TTGGTAAATG TGTTTGATTC [1538] Gossyp.kirkii TCTTGCCGTG AGTTTATTCT TGTTCCATCT ATGGTTTTTC TCTAGGCTAT TTCGTAAATG TGTTTGATTC [1537] Kokia.drynar TCTTGCCGTG AGTTTATTCT TGTTCCACCT ATGGTTTTTC TCTAGGCTAT TTGGTAAATG TGTTTGATTC [1536] [ 1550 1560 1570 1580 1590 1600 1610] [ . . . . . . .] A_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1609] B_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1608] C_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1608] D_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1606] E_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1608] F_genome ACTTTTATCC ATACAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1608] G_genome ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1608] Gossyp.kirkii ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1607] Kokia.drynar ACTTTTATCC ATATAAATTA GGCCGCTGAA GGTGCAAGGG TTTGTGGGGC TTCTCGGATC ATCGCTGTTG [1606] [ 1620 1630 1640 1650 1660 1670 1680] [ . . . . . . .] A_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTT-- ------ATAT GATTTGTCGT [1671] B_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTTAT ATCATTATAT GATTTGTCGT [1678] C_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTT-- ------ATAT GATTTGTCGT [1670] D_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTCTCATAG CATCATTT-- ------ATAT GATTTGTCGT [1668] E_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTT-- ------ATAT GATTTGTCGT [1670] F_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTTAT ATCATTATAT GATTTGTCGT [1678] G_genome ATGTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTT-- ------ATAT GATTTGTTAT [1670] Gossyp.kirkii ATTTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATAG CATCATTTAT CTGATT---- -ATTTGTCGT [1672] Kokia.drynar ATTTGAACCC CAGAAGATTT GAAGAAGGTA CCTATCATGG CATCATTTGT CTGATT---- -ATTTGTCGT [1671] [ 1690 1700 1710 1720 1730 1740 1750] [ . . . . . . .] A_genome TGTTTCTCAC TAAAAATACT AATATATTGA TCATATTTCT TTGCCTTCC- ACCAGCTAAG AGGTTTGGGA [1740] B_genome TGTTTCTCAC TAAAAATACT AATATACTGA TCATATTTCT TTGCCTGCC- ACCAGCTAAG AGGTTTGGGA [1747] C_genome TGTTTCTCAC TAAAAATACT AATATATTGA TCATATTTCT TTGCCTTCC- ACCAGCTAAG AGGTTTGGGA [1739] D_genome TGTTTCTCAC TAAAAATACT AATATATGGA TCATATTTCT TTGCCTGCCC ACCAGCTAAG AGGTTTGGGG [1738] E_genome TGTTTCTCAC TAAAAATACT AATATATTGA TCATATTTCT TTGCCTGCC- ACCAGCTAAG AGGTTTGGGA [1739] F_genome TGTTTCTCAC TAAAAATACT AATATACTGA TCATATTTCT TTGCCTGCC- ACCAGCTAAG AGGTTTGGGA [1747] G_genome TGTTTCTCAC TAAAAATACT AATATATTGA TCATATTTCT TTGCCTGCC- ACCAGCTAAG AGGTTTGGGA [1739] Gossyp.kirkii TGTTTCTCAC TAAAAATACT AATATATTGA TCCTATTTCT TTGCCTGCC- ACCAGCCAAG AGGTTTGGGA [1741] Kokia.drynar TGTTTCTCAC ACTAAATACT AATATACTGA TCCTATTTCT TTGCCTGCC- ACCAGCCAAG AGGTTTGGGA [1740] [ 1760 1770 1780 1790 1800 1810 1820] [ . . . . . . .] A_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1810] B_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAAGTG ATTGTGGAGA TCAGTTTCTT [1817] C_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1809] D_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1808] E_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1809] F_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1817] G_genome TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGATTCTT [1809] Gossyp.kirkii TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1811] Kokia.drynar TTACAGAATT TGTGAATCCA AAAGACTACG ACAAGCCTGT TCAAGAGGTG ATTGTGGAGA TCAGTTTCTT [1810] [ 1830 1840 1850 1860 1870 1880 1890] [ . . . . . . .] A_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1880] B_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1887] C_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1879] D_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTG TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1878] E_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCATTA TCTCATCCCC CTCCTTCCTT CCATAGGCTT [1879] F_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1887] G_genome CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1879] Gossyp.kirkii CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCATCCCC CTCCTTCCTT CCGTAGGCTT [1881] Kokia.drynar CGCTACGCCG TTGCCTAATA TCGAAAGTCC GAAACCAGTA TCTCGTCCCC CTCCTTCCTT CCGTAGGCTT [1880] [ 1900 1910 1920 1930 1940 1950 1960] [ . . . . . . .] A_genome CTCTGTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1950] B_genome CTCTCTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1957] C_genome CTCTCTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1949] D_genome CTCTCTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGTT TTTGGAGCTG [1948] E_genome CTCTCTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATAG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1949] F_genome CTCTCTCTAA ATTCCTCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1957] G_genome CTCTCTCTAA ATTCCCCAGA ATGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1949] Gossyp.kirkii CTCTCTTTAA ATACCCCAGA GTGGAAGCAT GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1951] Kokia.drynar CTCTCTTTAA ATTCCCCAGA GTGGAAGCAC GGTTTGATGG GTAGCCTCTC GGCTATAGCT TTTGGAGCTG [1950] [ 1970 1980 1990 2000 2010 2020 2030] [ . . . . . . .] A_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2020] B_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2027] C_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2019] D_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2018] E_genome TTCAACCTGT TTATGCTTTA ACTATTGGTG GAATGATTTC AGCATTTTTT GCCAAAAGTC ACCAAGAAAT [2019] F_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2027] G_genome TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTT GCAAAAAGTC ACCAAGAAAT [2019] Gossyp.kirkii TTCAACCTGT TTATGCTTTA ACCATTGGTG GTATGATTTC AGCCTTTTTC GCAAAAAGTC ACCAAGAAAT [2021] Kokia.drynar TTCAACCTGT TTATGCTTTA ACCATTGGTG GAATGATTTC AGCCTTTTTC GCAAAAAGTC ACCAAGAAAT [2020] [ 2040 2050 2060 2070 2080 2090 2100] [ . . . . . . .] A_genome GCAGGCTCGA ATACGCACAT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2090] B_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2097] C_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2089] D_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACCTTGC TCTCTGTCAT TCTCAATCTT [2088] E_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2089] F_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2097] G_genome GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTTTCTTTG CTCACATTGC TCTCTGTCAT TCTCAATCTT [2089] Gossyp.kirkii GCAGGCTCGA ATACGCACTT ACGCCTTCAT ATTCTCTTTA CTCACATTGC TCTCCGTCAT TCTCAATCTG [2091] Kokia.drynar GCAGGCTCGA ATACGCACTT ACGCTTTCAT ATTCTCTTTA CTCACATTGC TCTCCGTCAT TCTCAATCTG [2090] [ 2110 2120 2130 2140 2150 2160 2170] [ . . . . . . .] A_genome ATTCAGCAAT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2160] B_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2167] C_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2159] D_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2158] E_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGAAGAAT CCGAAGTCGA ATGCTGGAAA [2159] F_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2167] G_genome ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CCAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2159] Gossyp.kirkii ATTCAGCATT ATAATTTTGC TTACATGGGT GAGCGGTTAA CTAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2161] Kokia.drynar ATTCAGCATT ATAATTTTGC TTACATGGGC GAGCGGTTAA CTAGGAGAAT CCGAAGTCGA ATGCTGGAAA [2160] [ 2180 2190 2200 2210 2220 2230 2240] [ . . . . . . .] A_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACA GGAGCTTTAT GCTCGAGTTT [2230] B_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACT GGAGCTTTAT GCTCGAGTTT [2237] C_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACT GGAGCTTTAT GCTCGAGTTT [2229] D_genome AATTATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACT GGAGCTTTAT GCTCGAGTCT [2228] E_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACT GGAGCTTTAT GCTCGAGTTT [2229] F_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAATTCTACT GGAGCTTTAT GCTCGAGTTT [2237] G_genome AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTACT GGAGCTTTAT GCTCGAGTTT [2229] Gossyp.kirkii AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTAGT GGAGCTTTAT GCTCGAGCTT [2231] Kokia.drynar AAATATTGTC CTTCGAAGCC GCTTGGTTTG ATGAAGAAAA AAACTCTAGT GGAGCTTTAT GCTCGAGCTT [2230] [ 2250 2260 2270 2280 2290 2300 2310] [ . . . . . . .] A_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCGT TATTAGTTCA AACCACTTCT [2300] B_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCGT TGTTAGTTCA AACCACTTCT [2307] C_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCTT TGTTAGTTCA AACCACTTCT [2299] D_genome GAGCAATCAG GCTTCGATGG TTAAGACACA CGTCGCAGAC CGAATCTCAT TGTTAGTTCA AACCACTTCT [2298] E_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCAT TGCTAGTTCA AACCACTTCT [2299] F_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCGT TGTTAGTTCA AACCACTTCT [2307] G_genome GAGCAATCAG GCTTCGATGG TTAAGACACT CGTCGCAGAC CGAATCTCTT TGTTAGTTCA AACCACTTCT [2299] Gossyp.kirkii GAGCAATCAG GCTTCGATGG TTAAGACACT CGTTGCAGAC CGAATCTCGT TGTTAGTTCA AACCACTTCT [2301] Kokia.drynar GAGCAATCAG GCTTCGATGG TTAAGACACT CGTTGCAGAC CGAATCTCAT TGTTAGTTCA AACCACATCT [2300] [ 2320 2330 2340 2350 2360 2370 2380] [ . . . . . . .] A_genome GCTGTTACCA TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2370] B_genome GCTGTTACCA TCGCAATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2377] C_genome GCTGTTACCA TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2369] D_genome GCTGTTACCA TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2368] E_genome GCTGTTACCC TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2369] F_genome GCTGTTACCA TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2377] G_genome GCTGTTACCA TCGCGATGAT TATCGGGCTA GTCGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTCC [2369] Gossyp.kirkii GCTGTTACCA TCGCGATGAT TATCGGGCTA GTTGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTGC [2371] Kokia.drynar GCTGTTACCA TCGCGATGAT TATCGGGCTA GTTGTGGCTT GGAAGTTAGC AATAGTGATG ATTGCAGTGC [2370] [ 2390 2400 2410 2420 2430 2440 2450] [ . . . . . . .] A_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC GTCTCAACTA ATTTCGTCAA [2440] B_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATCTCAACTA ATTTCGTCAA [2447] C_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATTTCAACTA ATTTCGTCAA [2439] D_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATTTCAACTA ATTTCGTCAA [2438] E_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATTTCAACTA ATTTCGTCAA [2439] F_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATCTCAACTA ATTTCGTCAA [2447] G_genome AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTTT GCTTTCTAGC ATTTCAACTA ATTTCGTCAA [2439] Gossyp.kirkii AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTAT GCTTTCTAGC ATTTCAACTA ATTTCATCAA [2441] Kokia.drynar AACCTCTCGC AATTATGTGT TTCTACACAC GAAAAGTTAT GCTGTCTAGC ATTTCAACTA ATTTCGTCAA [2440] [ 2460 2470 2480 2490 2500 2510 2520] [ . . . . . . .] A_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2510] B_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2517] C_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2509] D_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC CTCATTTGGG [2508] E_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2509] F_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2517] G_genome GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2509] Gossyp.kirkii GGCACAAAAT CAAAGTACTC AAACAGCAGT GGAAGCTGTG TATAATCATA GAATTGTAAC TTCATTTGGG [2511] Kokia.drynar GGCACAAAAT CAAAGTACTC AAATAGCAGT GGAAGCTGTG TATAATCACA GAATTGTAAC TTCATTTGGC [2510] [ 2530 2540 2550 2560 2570 2580 2590] [ . . . . . . .] A_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2580] B_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2587] C_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2579] D_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAATAT [2578] E_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2579] F_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2587] G_genome AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCAAG GAAAGAGGCT AGGAAAAAAT [2579] Gossyp.kirkii AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCGAG GAAAGAGGCT AGGAAAAAAT [2581] Kokia.drynar AGCCTAGGTA AGGTTCTTCA ACTTTTCGAT GAGGCTCAAG AGGAACCGAG GAAAGAGGCT AGGAAAAAAT [2580] [ 2600 2610 2620 2630 2640 2650 2660] [ . . . . . . .] A_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2650] B_genome CATGGCTGGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2657] C_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2649] D_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2648] E_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2649] F_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2657] G_genome CATGGCTAGC GGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2649] Gossyp.kirkii CATGGCTAGC AGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2651] Kokia.drynar CGTGGCTAGC AGGGATTGGT ATGGGGTCAG CTCAAAGCCT AACATTTATG TCATGGGCTT TAGATTTTTG [2650] [ 2670 2680 2690 2700 2710 2720 2730] [ . . . . . . .] A_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCTGC? ?????????? ?????????? ?????????? [2689] B_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACATT CTTTATCTTG [2727] C_genome GTATGGAGGT GCATTGGTTC AAAAGGGAGA GATATCAGC? ?????????? ?????????? ?????????? [2688] D_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGC? ?????????? ?????????? ?????????? [2687] E_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACATT CTTTATCTTG [2719] F_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACATT CTTTATCTTG [2727] G_genome GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACATT CTTTATCTTG [2719] Gossyp.kirkii GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACCTT CTTTATCTTG [2721] Kokia.drynar GTATGGAGGT ACATTGGTTC AAAAGGGAGA GATATCAGCA GGGGATGTGT TTAAGACCTT CTTTATCTTG [2720] [ 2740 2750 2760 2770 2780 2790 2800] [ . . . . . . .] A_genome ?????????? ?????CATGT TGGTTTGAAT GGCAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAATT [2744] B_genome GTGAGCACCG GAAAGCATGT TGGTTTGAAT GGCAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAATT [2797] C_genome ?????????? ?????CATGT TGGTTTGAAT GTCAATGGAG AGCCCTTCGT GGCTTGCCAT GATTGCAATT [2743] D_genome ?????????? ?????CATGT TGGTTTGAAT GGTAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAATT [2742] E_genome GTGAGCACCG GAAAGCATGT TGGTTTGAAT GGCAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAGTT [2789] F_genome GTGAGCACCG GAAAGCATGT TGGTTTGAAT GGCAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAATT [2797] G_genome GTGAGCACCG GAAAGCATGT TGGTTCGAAT GGCAATGGAG AACCCTTCGT GGCTTGCCAT GATTGCAATT [2789] Gossyp.kirkii GTGAGCACCG GAAAGCATGT TGGTTTGAAT GGCAATGGAG AACCCTTCGC GTTTTGCCAT GATTGCAATT [2791] Kokia.drynar GTGAGCACAG GAAAGCATGT TGGTTTGAAT GGCAATGGAG AACTCTTCGT GGCTTGCCAT GATTGCAATT [2790] [ 2810 2820 2830 2840 2850 2860 2870] [ . . . . . . .] A_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AGCTTAAGGA AGGTCGAAAA GCTTCTTTGC GTTGCGGTAA [2814] B_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AACTTAAGGA AGGTCGAAAA GCTTGTTTGC GATGCGGTAA [2867] C_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AACTTAAGGA AGGTCGAAAA GCTTGTTTGC GTTGCGGTAA [2813] D_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AACTTAAGGA AGGTCGAAAA GCTTGTTTGC GTTGCGGTAA [2812] E_genome TCCCCATTTG CAAAACTTGC TTCGACTATG AACTTAAGGA AGGTCGAAAA GCTAGTTTGC TTTGCGGTAA [2859] F_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AACTTAAGGA AGGTCGAAAA GCTTGTTTGC GTTGCGGTAA [2867] G_genome TCCCCATTTG CAAAACTTGT TTCGACTATG AATTTAAGGA AGGTCGAAAA GCTTGTTTGC GTTGCGGTAA [2859] Gossyp.kirkii TCCCCATTTG CAAAACTTGT TTGGACTATG AACTTAAGGA AGGTCGAAAA GCTTGTCTGC GTTGCGGTAA [2861] Kokia.drynar TCCCCATTTG CAAAACTTGT TTCGACTCGG AACTTAAGGA AGGTCGAAAA GCTTGTCTGC GTTGCGGTAA [2860] [ 2880 2890 2900 2910 2920 2930 2940] [ . . . . . . .] A_genome TCCATACGAT GGCATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGGA TCAGTCATAT [2884] B_genome TCCATATGAT GGTATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGGA TCAGTCATAT [2937] C_genome TCCATACGAT GGTATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGGA TCAGTCATAT [2883] D_genome TCCATACGAT GGTATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGAA TCAGTCATAT [2882] E_genome TCCATACGAT GGTATGTTTC TATTTGCTAC TTTGTAAATC ATTAGATTCT TGAGTTGGGA TCTGTCATAT [2929] F_genome TCCATACGAT GGTATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGGA TCAGTCATAT [2937] G_genome TCCATACGAT GGTATGTTTC TATTTGCTCT TTTGTAAATC TTTAGATTCT CGGGTTGGGA TCAGTCATAT [2929] Gossyp.kirkii TCCATACGAT GGTATGTTTC TATTTGCTCC TTTGTAGATC TTTAGATTCT TGAGTTGGGT TCAGTCATAT [2931] Kokia.drynar TCCATACGGG GGTATGTTTC TATTTGCTCC TTTGTAAATC TTTAGATTCT TGAGTTGGGA TCAGTCATAT [2930] [ 2950 2960 2970 2980 2990 3000 3010] [ . . . . . . .] A_genome CCCAAAAATG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [2954] B_genome CCCAAAA-TG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [3006] C_genome CCCAAAA-TG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [2952] D_genome CCCAAAA-TA TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [2951] E_genome CCCAAAA-TG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [2998] F_genome CCCAAAA-TG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [3006] G_genome CCCAAAA-TG TACATATTAA CTTCATTTGT TTTTTCCAAT GCTTGTTTAA TTTCCCTGGA TTCTTTGCCA [2998] Gossyp.kirkii CCCAAAA-TA TACATAATAA CTTCATTTGT TTTTACCAAT ---------- ---------- ---------- [2970] Kokia.drynar CCCAAAA-TA TACATAATAA CTTCATTTGT TTTTACCAAT ---------- ---------- ---------- [2969] [ 3020 3030 3040 3050 3060 3070 3080] [ . . . . . . .] A_genome TTTACATAAC TGAATTAATA TTTTAAGCTG ATGGCTCAAC TCCTCAGAGA ACCTACTGGA TGATGCGGAA [3024] B_genome TTTACATAAC TGAATTAATA TTTTAAGCTG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGATGCGGAA [3076] C_genome TTTACATAAC TGAATTAATA TTTTAAACTG ATAGCTCAAC TCCTCAGAGA ACCTGCTGGA TGATGCGGAA [3022] D_genome TTTACATAAC TGAATTAATA TTTTAAA?TG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGATGCGGAA [3021] E_genome TTTACATAAC TGAATTAATA TTTTAAACTG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGATGCGGAA [3068] F_genome TTTACATAAC TGAATTAATA TTTTAAGCTG ATGGCTCAAC TCCTCAGAGA ATCTGCTGGA TGATGTGGAA [3076] G_genome TTTACATAAC TGAATTAATA TTTTAAACTG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGATGCGGAA [3068] Gossyp.kirkii ---------- ---------A TTTTAAACTG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGACGCGGAA [3021] Kokia.drynar ---------- ---------A TTTTGAACTG ATGGCTCAAC TCCTCAGAGA ACCTGCTGGA TGACGCGGAA [3020] [ 3090 3100 3110 3120 3130 3140 3150] [ . . . . . . .] A_genome AAGGCATCTG GTGATCGATC CACAATGGCC GCACACATGG GCAAGTCTCA GGTATTTCCT ATATTCCAGG [3094] B_genome AAGGCATCTG GTGATCGATC CACAATGGCC GCACACATGG ACAAGTCTCA GGTATTTCCT ATATTCCAGG [3146] C_genome AAGGCATCTG GTGACCGATC CACAATGGCC GCACACATGG ACAAGTCTCA GGTATTTCCT ATATTCCAGG [3092] D_genome AAGGCATCTG GTGATCGATC CACAATAGAC GCACACCTGG ACAAGTCTCA GGTATTTCCT ATATTCCAGG [3091] E_genome AAGGCATCTG GTGATCGATC CACAATGGCC GCACACATGG ACAAGTCTCA GGTATTTCCT ATATTCCAGG [3138] F_genome AAGGCATCTG GTGATCGATC CACAATGGCC GCACACATGG ACAAGTCTCA GGTATTTCCT ATATTCCAGG [3146] G_genome AAGTCATCTG GTGATCGATC CACAATGGCC GCACACATGG ACAAGTCTCA GGTATTTCCT ATAGTCCAGG [3138] Gossyp.kirkii AAGGCATCTG GTGATCGATC CACAATGGCT GCACACATGG CCAAGTCTCA GGTATTTCCT ATATTCCAGG [3091] Kokia.drynar AAGGCATCTG GTGATCGATC CACAATGGCT GCACACATGG ACAAGTCTCA CGTATTTCCT ATATTCCAGG [3090] [ 3160 3170 3180 3190 3200 3210 3220] [ . . . . . . .] A_genome TCCAACCTCA TTTTTAAGT- TGGTATAATT TGTAACGTTT GACATTTCCT TGGTACTTTA GTGTTACGAT [3163] B_genome TCCAACCTCA TTTTTAAGT- TAGTATAATT TGTAACGTTT GACATTTCCT ATGTACTTTA GTGTTACGAT [3215] C_genome TCCAACCTCA TTTTAAAATA TATTATAATT TGTAACGTTT GACATTTCCT AGGTACTTTA GTGTTACGAT [3162] D_genome TCCAACCTCA TTTTTAAGT- TAGTATAATT TGTAACGTTT TACATTTCCT AGGTACTTCA GTGTTACGAT [3160] E_genome TCCAACCTCA TTTTCAAGT- TAGTATAAAT TGTAACGTTT GACATTTCCT AGGTACTTTA GTGTTACGAT [3207] F_genome TCCAACCTCA TTTTTAAGT- TAGTATAATT TGTAACGTTT GACATTTCCT AGGTACTTTA GTGTTACGAT [3215] G_genome TCCAACCTCA TTTTAAAGA- TCGTATAATT TGTAACGTTT GACATTTACT AGGTTCTTTA GTGTTACGAT [3207] Gossyp.kirkii TCCAACCTCA TTTTTAAGT- TAGTATAATT AGTAACGTTT GACATTTCCT AGGTACTTTA GTGTTACGAT [3160] Kokia.drynar TCCAACCTCA TTTTTAAGT- TAGTATAATT AGTAACGTTT GACCTTTCCT AGGTACTTTA GTATTACGAT [3159] [ 3230 3240 3250 3260 3270 3280 3290] [ . . . . . . .] A_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3233] B_genome ACTCAGAGCT CATTCATCTT GGTTTATTAT AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3285] C_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GAAGTGTGTC [3232] D_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3230] E_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AACTCATGCA AGACATATCA GCAGTGTGTC [3277] F_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3285] G_genome ACTGAGAGCT CATTCATCTT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3277] Gossyp.kirkii ACTGAGACCT TAT---TCAT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3227] Kokia.drynar ACTGAGACCT CAT---TCAT GGTTTATTAC AGGATGCTGG AATTCATGCA AGACATATCA GCAGTGTGTC [3226] [ 3300 3310 3320 3330 3340 3350 3360] [ . . . . . . .] A_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTAAA AGAAAAGTCC AATTCTAGTT [3303] B_genome TGCGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTTA TAGTCTTAAA AGAAAAGTCC AATTCTAGTT [3355] C_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTAAA AGAAAAGTCC AATTCTAGTT [3302] D_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTAAA AGAAAAGTCC AATTCTAGTT [3300] E_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTGAA AGAAAAGCCC AATTCTAGTT [3347] F_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTAAA AGAAAAGTCC AATTCTAGTT [3355] G_genome TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTTCA TAATCTTAAA AGAAAAGACC AATTCTAGTT [3347] Gossyp.kirkii TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTCCA TAATCTTAAA AGTAAAGTCC AATTCTAGTT [3297] Kokia.drynar TACGCTTGAT AGTGGTATGT AACATTATTA GTTTCTTCCA TAATCTTAAA AG-AAAG-CC AATTCTAG-T [3293] [ 3370 3380 3390 3400 3410 3420 3430] [ . . . . . . .] A_genome GTCTTGTCTC ATCCTTTGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACTTAATTTA GAAGAATAGG [3373] B_genome GTCTTGTCTC ATCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3425] C_genome GTCTTGTGTC ATCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3372] D_genome GTCTTGTCTC ACCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3370] E_genome GTCTTGTCTC ATCTTATGTT TTAATGAAGA AATGACCGAA GAAAATGGGA ACCCAATTTG GAAGAACAGG [3417] F_genome GTCTTGTCTC ATCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3425] G_genome GTCTTGTCTC ATCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3417] Gossyp.kirkii GTCTTGGCTC ATCCTATGCT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAACAGG [3367] Kokia.drynar GTCTTGTCTC ATCCTATGTT TTAATGAAGA AATGACCGAA GACAATGGGA ACCCAATTTG GAAGAATAGG [3363] [ 3440 3450 3460 3470 3480 3490 3500] [ . . . . . . .] A_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3443] B_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3495] C_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCAA GGTGGAAATA GAGGATCAAG [3442] D_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3440] E_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCGA GGTGGAAATA AAGGCTCAAG [3487] F_genome GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAAAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3495] G_genome GTGGAAAGTT GGAAAGAAA? ?A?TATT??? AATAATAAGA CTTCAATCAA GGTGGAAATA GAGGCTCAAG [3487] Gossyp.kirkii GTGGAAAGTT GGAAAGAAAA GAAGAATAAG AAGAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3437] Kokia.drynar GTGGAGAGTT GGAAAGAAAA GAAGAATAAG AAGAAAAAGA CTTCGATCAA GGTGGAAATA GAGGCTCAAG [3433] [ 3510 3520 3530 3540 3550 3560 3570] [ . . . . . . .] A_genome TTCCGCCTGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG TCTTACCTGA ACCCTGTTGT [3513] B_genome TTCCGCCTGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGTTGT [3565] C_genome TTCCGCCTGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGTTGT [3512] D_genome TTCCGCCTGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTCCCTGA ACTCTGTTGT [3510] E_genome TTCCGCCTGG GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGCTGT [3557] F_genome TTCCGCCAGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGTTGT [3565] G_genome TTCCGCATGA GCAAATCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGTTGT [3557] Gossyp.kirkii TTCCGCCTGA GCAACTCATG GAAGATAAAC TGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCCGTTGT [3507] Kokia.drynar TTCCGGCTGA GCAACTCATG GAAGATAAAC CGTAAGTTTC AATTACAAAG CCTTACCTGA ACTCTGTTGT [3503] [ 3580 3590 3600 3610 3620 3630 3640] [ . . . . . . .] A_genome TTATTTATAA TACAAAGCAA ATTAATGAGA AGAGGTCAGT AATGTTTTTG TTTATAACAT TTTGACCAAC [3583] B_genome TTATTTATAA TACAAAGCAA ATTAATGAGA AGAAGTCAGT AATGTTTTTG TTTATAACAT TTTGACCAAC [3635] C_genome TTAT----AA TACAAAGCAA ATTAATGAGA AGAAGTCAGT AATGTTTTTG TTTATAACAT TTTGACCAAC [3578] D_genome TTAT----AA TACAAAGCAA ATTAATGAGA AGAAGTCATT AATGTTTTTG TTTATAACAT TTTGACCAAC [3576] E_genome TTAT----AA TACAAAGCAA ATTAATGAGA AGAAGTCAGT AATGTTTTTG TTTATAACAT TTTGACCAAC [3623] F_genome TTATTTATAA TACAAAGCAA ATTAATGAGA AGAAGTCAGT AATGTTTTTG TTTTTAACAT TT-GACCAAC [3634] G_genome TTAT----AA TACAAAGCAA ATTAATGAGA AGAAGTCAGT AATGATTTTG TTTATAACAT TTTGACCAAC [3623] Gossyp.kirkii TTAT--ATAA TACAAAGCAA ATTA-TGAGA AGAAGTCAGT AATGTTTTTG TTTATAACAT TTTGACCAAC [3574] Kokia.drynar TTAT--ATAA TACAAAGCAA ATTA-TGAGA AGAAGTCAGT AATGTTTTTG TTTATAACAA TTTGACCAAC [3570] [ 3650 3660 3670 3680 3690 3700 3710] [ . . . . . . .] A_genome CACTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3653] B_genome CACTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3705] C_genome CACTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3648] D_genome CACTAATCGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3646] E_genome CACTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3693] F_genome CACTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3704] G_genome CATTAATAGC TTTATTGAGC ATGCTTTAAC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3693] Gossyp.kirkii CACTAATAGC TTTATTGAGC ACGCTTTAAC CATATATATC AGATTACCAA TTTAATTTGC TTAGAATTTA [3644] Kokia.drynar CACTAATAGC TTTATTGAGC ACGCTTTACC CATATATATC AGATTACCAA TTTGATTTGC TTAGAATTTA [3640] [ 3720 3730 3740 3750 3760 3770 3780] [ . . . . . . .] A_genome ATGGAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTCTTGCAGA GCAGCTGATG CCTTTCAACC [3723] B_genome ATGGAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTCTTGCAGA GCAGCTGATG CATTTCAACC [3775] C_genome ATGGAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTTTTGCAGA GCAGCTGATG CTTTTCAACC [3718] D_genome ATGGAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTTTTGCAGA GCAGCTGATG CTTTTCAACC [3716] E_genome ATGAAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTTTTGCAGA GCAGCTGATA CTTTTCAATC [3763] F_genome ATGGAAGTAA TGTTCAATTA TGACTGATAT GTAATATTTG CTCTTGCAGA GCAGCTGATG CTTTTCAACC [3774] G_genome ATGGAAGTAA TGTTCAATTA TGACTGAAAT GTAATATTTG CTTTTGCAGA GCAGCTGATG CTTTTCAACC [3763] Gossyp.kirkii ATGGAAGTAA TGTTCAATTA TGACTGATAT GATATATTTG CTTTTGCAGA GCAGCTGATG CTTTTCAACC [3714] Kokia.drynar ATGGAAGTAA TGTTCAATTA TGACTGATAT GATATATTTG CTTTTGCAGA GCAGCTGATG CTTTTCAACC [3710] [ 3790 3800 3810 3820 3830 3840 3850] [ . . . . . . .] A_genome CCTCTCGACC GTAATTCCAA TTTCGAAAAG TAGACTTGCA CTATATAGAA CTGTGATCAT TATGCGGTTG [3793] B_genome CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGTTTG [3845] C_genome CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAAACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3788] D_genome CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3786] E_genome CCTCTCGACC GTAGTTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3833] F_genome CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3844] G_genome CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAAACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3833] Gossyp.kirkii CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3784] Kokia.drynar CCTCTCGACC GTAATTCCAA TTCCGAAAAG CAGACTTGCA CCATATAGAA CTGTGATCAT TATGCGGTTG [3780] [ 3860 3870 3880 3890 3900 3910 3920] [ . . . . . . .] A_genome ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCTTTTGCA CTGTGGCTGA [3863] B_genome ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCTTTTGCT CTGTGGCTGA [3915] C_genome ATCATTTTGG GTTTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCTTTTGCT CTGTGGCTGA [3858] D_genome ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCTTTTGCT CTGTGGCTGA [3856] E_genome ATCATTTTGG GTCTTTTCTT CCGTTACCGA GTAACGAATC CAGTTAACAG TGCTTTTGCT CTGTGGCTGA [3903] F_genome ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACAAATC CAGTTGACAG TGCTTTTGCT CTGTGGCTGA [3914] G_genome ATCATTTTGG GTTTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCCTTTGCT CTGTGGCTGA [3903] Gossyp.kirkii ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACGAATC CAGTTGCCAG TGCTTTTGCT CTGTGGC??? [3854] Kokia.drynar ATCATTTTGG GTCTTTTCTT CCATTACCGA GTAACGAATC CAGTTGACAG TGCTTTTGCT CTGTGGCG?? [3850] [ 3930 3940 3950 3960 3970 3980 3990] [ . . . . . . .] A_genome CTGTGGTTGA ACATGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3933] B_genome CTGTGGT?GA ACATGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3985] C_genome CTGTGGTTGA ACATGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3928] D_genome CTGTGGTTGA ACATGTTGGG TTGAATGTTA ATGGTGAACC TTTTGTGGCT TGCCATGAAT GTAATTTCCC [3926] E_genome CTGTGGT?GA ACATGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3973] F_genome CTGTGGTTGA ACATGTCGGG TTGAATGTTA ATGGAGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3984] G_genome CTG?GGTAGA ACATGTTGGG TT?AATGTCA ATGGTGAACC CT??G?GGCT TGCCATGAAT GT??TTTCCC [3973] Gossyp.kirkii ????????GA ACATGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATTTCCC [3924] Kokia.drynar ?????????? ???TGTTGGG TTGAATGTTA ATGGTGAACC CTTTGTGGCT TGCCATGAAT GTAATCTCCC [3920] [ 4000 4010 4020 4030 4040 4050 4060] [ . . . . . . .] A_genome TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTAGTCCG [4003] B_genome TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTA?TCCA [4055] C_genome TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTAGTCCA [3998] D_genome TATTTGTAAG AGCTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTAGTCCA [3996] E_genome TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTACGTTG TGGTAGTCCA [4043] F_genome TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GTTTGCGTTG TGGTAATCCA [4054] G_genome TATTTGTAAG AGTTGTTTTG AGTATAATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTAGTCCA [4043] Gossyp.kirkii TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTACCCCA [3994] Kokia.drynar TATTTGTAAG AGTTGTTTTG AGTATGATCT TAAGGAAGGA CGAAAAGCTT GCTTGCGTTG TGGTAGCACA [3990] [ 4070 4080 4090 4100 4110 4120 4130] [ . . . . . . .] A_genome TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4073] B_genome TATGATGGTA CATTTCATTT TAACTCTTGA TACTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4125] C_genome TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATCTGGTT CTTGATAAAT [4068] D_genome TATGATGGTA CATTTCATTT TAATTTTTGA TGCTAGTTTT TTACTTGTTC CCATTTGGTT CTTGATAAAT [4066] E_genome TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4113] F_genome TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT TCATTAGGTT CTTGATAAAT [4124] G_genome TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4113] Gossyp.kirkii TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4064] Kokia.drynar TATGATGGTA CATTTCATTT TAATTCTTGA TGCTAGTTTT TTACTTGTTT CCATTTGGTT CTTGATAAAT [4060] [ 4140 4150 4160 4170 4180 4190 4200] [ . . . . . . .] A_genome CTTTGTTATA A-TCTTGTGT TTGCCAAGTG CTTGTTTGAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4142] B_genome CTTTGTTATA AATCTTGTGT TTGCCAAGTG CTTGTTTGAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4195] C_genome CTTTGTTATA AATCTTGTGT TTGCCAAGTG CTTGTTTGAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4138] D_genome CTTTGTTATA AATCTTGTGA TTGCCAAGTG CTTGCTTGAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4136] E_genome CTTTGTTATA AATCTTGTGT TTGCCAAATG CTTGTTTGAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4183] F_genome CTTTGTTATA AATCTTGTGT TTGTCAAGTG CTTGTTTGAT TTCCCATGAA AAAGATAGAG ATAGAGAAGT [4194] G_genome CTTTGTTATA AATCTTGTGT TTGCCAAGTG CTTGTTCGAT TTCCCATGAA AATGATAAAT ATAGAGAAGT [4183] Gossyp.kirkii CTTTGTTATA AATCTTGTAT TTGCCAAGTG CTTGTTTAAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4134] Kokia.drynar CTATGTTATA AATCTTGTAT TTGCCAAGTG CTTGTTTAAT TTCCCATGAA AAAGATAAAG ATAGAGAAGT [4130] [ 4210 4220 4230 4240 4250 4260 4270] [ . . . . . . .] A_genome TGTAAACTGA TTGCACGACT GATTATTGTG AACTCCTCAG AAAACCTGTT GGACGATGTC GAGAAGGCCA [4212] B_genome TGTAAACTGA TTGCACGACT GATTATTGTG AACTCCTCA? AAAACCTGTT GGACGATGTC GAAAAGGCCA [4265] C_genome TGTAAACTGA TTGCACGACT GATTATTGTG AGCTCCTCAG AAAACCTGTT GGACGATGTC GAGAAGGCCA [4208] D_genome TGTAAACTGA TTGCACGACT GATTATTGTG AACTCCTCAG AAAACCTGTT GGACGATGTC GAGAAGGCCA [4206] E_genome TGTAAACTGA TTGCACGACT GATTATTGTG AATTCCTCAG AAAACCTGTT GGACGATGTC GAGAAGGCCA [4253] F_genome TGTAAACTGA TTGCACGACT GATTATTGTG AACTCCTCAG AAAACCTATT GGACGATGTC GAGAAGGCCA [4264] G_genome TGTAAACTGA TTGCACGACT GATTATTGTG AACTC---AG AAAACCTGTT GGAC?ATGTC GAGAAGGCCA [4250] Gossyp.kirkii TTTAAACTGA TTGCACGACT GGTTATTGTG AACTCCTCAG AGAACCTGTT GGACGATGTC GAGAAGGCAA [4204] Kokia.drynar TTTAAATTGA TTGCACGACT GGTTATTGTG AACTCCTCAG AGAACCTGTT GGACGATGTC GAGAAGGCAA [4200] [ 4280 4290 4300 4310 4320 4330 4340] [ . . . . . . .] A_genome CCGGCGATCA ATCGACAATG GCTGCACATT TGAGCAAGTC TCAGGTATTG TTTT-TTGCT GCTTTTGAAA [4281] B_genome CCGGCGATCA ATCGACAATG GCTGCACATT TGAGCAAGTC TCAGGTATTG TTTTCTTGCT GCCTTTGAAA [4335] C_genome CCGGTGATCA ATCGACAATG GCTGCACATT TGAGCAAGTC TCAGGTACTG ATTT-TTGCT GCCTTTGAAA [4277] D_genome CCGGCGATCA ATCGACAATG GCTGCACATT TGAACAAGTC TCAGGTATTG TTTT-TTGCT GCCTTTGAAA [4275] E_genome CCGGGGATCA ATCGACAATG GCTGCACATT TGAGCAAGTC TCAGGTATTG TTTTTTTGCT GCCTTTGAAA [4323] F_genome CCGGCGATCA ATCGACAATG GCTGCACATT TGAGCAAGTC TCAGGTATTG TTTT-TTGCT GCCTTTGAAA [4333] G_genome CCGGTGATCA ATCGACAATG GCTGCACATT TGACCAAGTC TCAGGTACTG TTTT--TGCT GCCTTTGAAA [4318] Gossyp.kirkii CAGGCGATCA ATCGACAATG GCTGCACAGT TGAGCAAGCC TCAGGTACTG TTTT-TTGCT GCCTTTGAAA [4273] Kokia.drynar CAGGCGATCA ATCGACAATG CCTGCACAGT TGAGCAAGTC TCAGGTACTG TTTT-TTGCT GCCTTTGAAA [4269] [ 4350 4360 4370 4380 4390 4400 4410] [ . . . . . . .] A_genome GGTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4349] B_genome GGTT--CAGT CAAAGCCAG- AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4402] C_genome CGTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATATTG [4345] D_genome GGTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4343] E_genome GGTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4391] F_genome GGTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4401] G_genome ATTT--CAGT CAAAGCCAGG AGGGATATTG AGAGCTTTGT GTTATTCATG TTGGTTTATA CAGGAT?TTG [4386] Gossyp.kirkii GGTTTTCAGT CAAAGCGAGG AGGGATATTG AAAGCTTTGT GTTTTTCATG TTGGTTTATA CAGGATGTTG [4343] Kokia.drynar GGTTTTCAGT CAAAGCCGGG AGGGATATTG AAAGCTTTGT GTTATTCATG TTGGTTTATA CAGGATGTTG [4339] [ 4420 4430 4440 4450 4460 4470 4480] [ . . . . . . .] A_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4419] B_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4472] C_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4415] D_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4413] E_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATAAAAAT TTCTTTCCAT [4461] F_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4471] G_genome GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4456] Gossyp.kirkii GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [44913] Kokia.drynar GAATTCATGC AAGACATATC AGCAGTGTGT CTACATTGGA TAGTGGTATG TAATATAAAT TTCTTTCCAT [4409] [ 4490 4500 4510 4520 4530 4540 4550] [ . . . . . . .] A_genome ATTATTGGTT TCTTTCTTTC AA--TTCCTT CAATTCTGAA AGCTCGAACC GTCTCGTAAA ATATCGTAGA [4487] B_genome ACTATTGGTT TCTTTCTTTC AATCTTCCTT CAATTCTGAA AGCTCGAATC GTCTCGTAAA ATATCGTAGA [4542] C_genome ATTATTGGTT TCTTTCTTTC AATCTTCCTT CAATTCTGAA AGCTCGAATC GTCTCGTAAA ATATCGTAGA [4485] D_genome ATTAATGGTT TCTTTCTTTC AATCTTCCTT CAACTCTGAA AGCTCGAATC GTCTCGTAAA ATATCGTAGA [4483] E_genome ATTATTGGTT TCTTTCTTTC AATCTTCCTT CAATTCTGAA ATATCGAATC GTCTCGTAAA ATATCGTAGA [4531] F_genome ATTATTGGTT TCTTTCTTTC AATCTTCCTT CAATTCTGAA AGCTCGAATC GTCTCGTAAA ATATCGTAGA [4541] G_genome ATTATTGGTT TCTTTCTTTC AATCTTCCTT CAATTCTGAA AGCTCGAATC GTCTCGTAAA ATATCGTAGA [4526] Gossyp.kirkii ATTAATGATT TCTTTCTTTC AATCTTCCTT CAATTTTCAA CGCTCGAATT GTTTTGTAAA ATATCGTAGA [4483] Kokia.drynar ATTATTGATT TCTTTCTTTC AATCTTCCTT CAATTCTCAA AGCTCGAATC GTCTTGTAAA ATATCGTAGA [4479] [ 4560 4570 4580 4590 4600 4610 4620] [ . . . . . . .] A_genome AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4557] B_genome AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4612] C_genome AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4555] D_genome AATGGCTGAA GACAATGGGA ATTCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4553] E_genome AATGGCTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4601] F_genome AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG -TGGAAAGTT GGAAAGAAAA GAAGAACAAG [4610] G_genome AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4596] Gossyp.kirkii AATGACTGAA G?CAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGA?CAAG [4553] Kokia.drynar AATGACTGAA GACAATGGGA ATCCGATTTG GAAGAACAGG GTGGAAAGTT GGAAAGAAAA GAAGAACAAG [4549] [ 4630 4640 4650 4660 4670 4680 4690] [ . . . . . . .] A_genome AAGAAGAAGC CTGCAACAAC TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4627] B_genome AAGAAGAAGC CTGCAACAAC CAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4682] C_genome AAGAAGCAGC CTGCAACAAC TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4625] D_genome AAGAAGAAGC CTGCAACAAC TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4623] E_genome AAGAAGAAGC CTGCAACAAC CAAGATTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGACGATA [4671] F_genome AAGAAGAAGC CTGCAGCAAA TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4680] G_genome AAGAAGAAGC CTGCAACAAC TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4666] Gossyp.kirkii AAGAAGAAGC CTGCAACAAC TAAGGTTGAA AGAGAGGCTG AAAT?CCACC TGAGCAACAA ATGGAAGATA [4623] Kokia.drynar AAGAAGAAGC CTGCCCCAAC TAAGGTTGAA AGAGAGGCTG AAATCCCACC TGAGCAACAA ATGGAAGATA [4619] [ 4700 4710 4720 4730 4740 4750 4760] [ . . . . . . .] A_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATATACAA AGC------- -AGATTAATG [4689] B_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAGTATACAA AGC------- -AGATTAATG [4744] C_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATATACAA AGC------- -AGATTAATG [4687] D_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATGTACAA AGC------- -AGATTAATG [4685] E_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATCTACAA AGC------- -AGATTAATG [4733] F_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATATACAA AGC------- -AGATTAATG [4742] G_genome AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATATACAA AGC------- -AGATTAATG [4728] Gossyp.kirkii AACCGTAAGT ATTTAATTAG AAAAGCCTTG CTTGATTTTG AAATATACAA AGCACTGAAG CAGATTAATG [4693] Kokia.drynar AACCGTAAGT ATTTAATTAG AAAAGCGTTG CTTGATTTTG AAATATACAA AGCCCTGAAG CATATTAATG [4689] [ 4770 4780 4790 4800 4810 4820 4830] [ . . . . . . .] A_genome ATAAGAGCCT ATTTAGTAAA ATGATTTTTG TTTATGTTAT GTGTTACTGA TATGTAATAT TTGCATCTGC [4759] B_genome ATAAGAGCCT ATTTAGTGAA ATGATTTTTG TTTATGTTAT GTGTTACTGA TATGTAATAT TTGCACCTGC [4814] C_genome ATAAGAGCCT ATTTAGTGAA ATGATTTT-G TTTATGTTAT GTGTT?CTGA TATGTAATAT TTGCATCTGC [4756] D_genome ATAAGAGCCT ATTTAGTGAA ATGATTTTTG TTTATGTTAT GTGTTACTGA TATGTAATAT TTGCATCTGC [4755] E_genome ATAAGAGCCT ATTTAGTGAA ATGATTTTTG TTTATGTTAT GTGTTACTGA TATGTAATAT TTGCATCTGC [4803] F_genome ATAAGAGCCT ATTTAGTGAA ATGATTTTTG TATGTGTTAT GTGTTACTGA TATGTAATAT TTGCATCTGC [4812] G_genome ATAAGAGCCT ATTTAGTGAA ATGATTTTTG TTTATGTTCT GTGTTACTGA TATGTAATAT TTGCATCTGC [4798] Gossyp.kirkii ATAAGGGT?T ATTTAGTGAA ATGATTTTTG TTTATGTTGT GTGTTACTGA TATGTAATAT TTGCATCTGC [4763] Kokia.drynar ATAAGGGTCT ATTTAGTGAA ATGATTTTTG TTTATGTTGT GTGTTACTGA TATGTAATAT TTGCATCTGC [4759] [ 4840 4850 4860 4870 4880 4890 4900] [ . . . . . . .] A_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4829] B_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4884] C_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4826] D_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4825] E_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4873] F_genome AGGGCACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAAT?CCGAA AAGCAGACTT GCACCATACC [4882] G_genome AGGGCACC?? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [4868] Gossyp.kirkii AGGGTACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4833] Kokia.drynar AGGGTACCGG ATGCTTCCCA GCCCCTCTCG ACTATAATTC CAATCCCGAA AAGCAGACTT GCACCATACC [4829] [ 4910 4920 4930 4940 4950 4960 4970] [ . . . . . . .] A_genome GAACCGTGAT CATTATGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4899] B_genome GAACCGTGAT CATTATGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4954] C_genome GAACCGTGAT CATTATGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4896] D_genome GAACCGTGAT CATTATGCGA TTGATCATTC TTGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4895] E_genome GAACCGTAAT CATTATGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4943] F_genome GAACCGTGAT CATTATGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4952] G_genome ?????????? ?????????? ?????????? TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTGA [4938] Gossyp.kirkii GAACCGTGAT CATTTTGCGA TTGATCATTC TCGGTCTTTT CTTCCATTAT CGAGTAACAA ACCCCGTTG? [4903] Kokia.drynar GAACCGTGAT CATTTTGCGA TTGATCATTC TCGGTCTTTT CTTCAATTAT CGAGTAACAA ACCCTGTTGA [4899] [ 4980 4990 5000 5010 5020 5030 5040] [ . . . . . . .] A_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGTGAT CTTGGCACCT CAACTTTTAG CGAATACACT [4969] B_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGTGAT CTTGGCACCT CAACTTTTAG CGAATACACT [5024] C_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGTGAT CTTGGCACCT CAACTTTTAG CGAATACACT [4966] D_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGTGAT CTTGGCACCT CAACTTTTAG CGAATACACT [4965] E_genome CAGTGCTTTT GGACTGTGGC TTACTTCAGT CATATGTGA? ?????????? ?????????? ?????????? [5013] F_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGGAAT CTTGGCACCT CAACTTTTAG CGAATACACT [5022] G_genome CAGTGCTTTT GGACTGTGGC TCACTTCAGT CATATGTGAT CTTGGCACCT CAACTTTTAG CGAATACACT [5008] Gossyp.kirkii CAGTGCTTTT GGCCTGTGGC TC?CTTCAGT C????????T CTTGGCACCT CAACTTTTAG CGAATACACT [4973] Kokia.drynar CAGTGCTTTT GGCCTGTGGC ?CACTTCAGT CA???????T CTCGGCACCT CAACTTTTAG CGAATACACT [4969] [ 5050 5060 5070 5080 5090 5100 5110] [ . . . . . . .] A_genome GTTGTCCATG TCGGCCAGGT CGCCAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5039] B_genome GTTGTCCATG TCGGCCAGGT CGCCAAGATT AATCCAGAGG CTCCACTCGA TAAAGTGTGT GTTCTTAGCT [5094] C_genome GTTGTCCATG TCGGCCAGAT CGCCAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5036] D_genome GTTGTCCATG TCGGCCAGGT CGCTAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5035] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5083] F_genome GTTGTCCATG TCGGCCAAGT CGCCAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5092] G_genome GTTGTCCATG TCGGCCAGAT CGCCCAGATT AATCCACAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5078] Gossyp.kirkii GTTGTCCATG TCGGCCAGGT CGCCAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5043] Kokia.drynar GTTGTCCATG TCGGCCAGGT CGCCAAGATT AATCCAGAGG CTCCACTTGA TAAAGTGTGT GTTCTTAGCT [5039] [ 5120 5130 5140 5150 5160 5170 5180] [ . . . . . . .] A_genome GCGGAATGTC GACAGGT-CC GGGCTTCACT ACAACTCGGC TTTTTTTTTT CCATTTTGGA CATATATGAA [5108] B_genome GTGGAATGTC GACAGGT-CC GGACTTCACT ACAACTCTAC TTTTTTT-CT CCATTTTGGA TACATATGAA [5162] C_genome GCGGAATGTC GACAGGT-CC GGACTTCGC- --AACTCTGC TTTTTTT-CT GCATTTTGGA TATATATGAA [5101] D_genome GCGGAATGTC GACAGGT-CT GGACTTCACT AAAACTTTAC TTTTTT--CT CCATTTTAGA TATATATAAA [5102] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5153] F_genome GCGGAATGTC GACAGGT-CT GGACTTCACT ACAACTCTGC TTTTTTT-CT CCATTTTGGA TATATATGAA [5160] G_genome GCGGAATGTC GACAGGT-CC GAACTTCAC- --AACTCTGC TTTTTTTTCT GCATTTTGGA TATATATGAA [5144] Gossyp.kirkii GCGGAATGTC CACAGGTTCC GGACTTCACT ACAACTCTGC TTTTTTTTCT TCATTTTCGA TATA-----G [5108] Kokia.drynar GCGGAATGTC CACAGGTTCC GGACTTCACT ACAACGCTGC TTTTTTTTCT TCATTTTCAA TATA-----G [5104] [ 5190 5200 5210 5220 5230 5240 5250] [ . . . . . . .] A_genome CACATGACTT ATAGCTCATC CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5178] B_genome CACATGACTT ATAGCTCATC CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5232] C_genome CACATGACTT ATAGCTCATC CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5171] D_genome CACATGACTT A--GCTCATC TTTGCTTACA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5170] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5223] F_genome CACATGACTT ATAGCTCATC CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5230] G_genome CACATAACTT ATAGCTCATC CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5214] Gossyp.kirkii CTCATCAGTC A----TC--C CCTGCTTGCA GGTTTCGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5172] Kokia.drynar CTCATCAGTC A----TC--C CCTGCTTGCA GGTTTTGGTG CCACTGTGAA TGTTGCTAAA CCAAAAAAGG [5168] [ 5260 5270 5280 5290 5300 5310 5320] [ . . . . . . .] A_genome GTGGGTCTGT TGCAGTTTTT GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTATGT [5248] B_genome GTGGGTCTGT TGCAGTTTTT GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTATGT [5302] C_genome GTGGGTCTGT TGCAGTTTTT GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTATGT [5241] D_genome GTGGGTCTGT TGCAGTTTTT GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTTTGT [5240] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5293] F_genome GTGGGTCTGT TGCAGTTTTC GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTATGT [5300] G_genome GTGGGTCTGT TGCAGTTTTT GGACTTGGTG CTGTAGGTCT TGCGGTAAGT TATTGTTGTT GCTTTTATGT [5284] Gossyp.kirkii GTGGGTCTGT TGCAGTTTTC GGACTTGGTG CTGTAGGCCT TGCGGTACGT TATTGTTGTT GCTTTTATGT [5242] Kokia.drynar GTGGGTCTGT TGCAGTTTTC GGACTTGGTG CTGTAGGCCT TGCGGTACTT TATTGTTGTT GCTTTTATGT [5238] [ 5330 5340 5350 5360 5370 5380 5390] [ . . . . . . .] A_genome TATTATCCAT CTGGCAACTA TAAAAATTGG AATTGTACTT ATTTCTATTT TGTGAAACCT AGGCTGCTGA [5318] B_genome TACTATCCAT CTGGCAACTA TAAAAAT-GG AGTTGTACTT ATTTCTATTT TATGAAACCT AGGCAGCTGA [5371] C_genome TATTATCCAT CTGGCAACTA TAAAAAT-GG AGTTGTACTT ATTTCTATTT TGTGAAACCT AGGCTGCTGA [5310] D_genome TATTATCCAT TTGGCAACTA TAAAAAT-AG AGTTGTACTT ATTTCTATTT TGTGAAACCT AGGCTGCTGA [5309] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5363] F_genome TATTATCCAT CTGGCAACTA TAAAAAT--- -GTTGTACTT ATTTCTATTT TGTGAAACCT AGGCTGCTGA [5366] G_genome TACTATCCAT CTGGCAACTG TAAAAAT-GG AGTTGTACTT ATTTCTATTT TGTGAAACCT AGGCTGCTGA [5353] Gossyp.kirkii TATTATCCAT CTGGCAACTA TAAAAAT-GG AGTTGTACTT ATTTCTGTTT TGTGAAACCT AGGCTGCTGA [5311] Kokia.drynar TATTATCCAT CTGGCAACTA TAAAAAT-GG AATTGTACTT ATTTCTGTTT TGTGAAACCT AGGCTGCTGA [5307] [ 5400 5410 5420 5430 5440 5450 5460] [ . . . . . . .] A_genome AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTAAACC CCAACAGATT CGAAGAAGGT [5388] B_genome AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTAAACC CCAACAGATT CGAGGAAGGT [5441] C_genome AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTAAACC CCAACAGATT CGAAGAAGGT [5380]D_genome AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CA TTGGTATT GATCTAAACC CCAACAGATT CGAAGAAGGT [5379] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5433] F_genome AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTAAACC CCAACAGATT CGAAGAAGGT [5436] G_genome AGGAGCAAGA TTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTAAACC CCAACAGATT CGAAGAAGGT [5423] Gossyp.kirkii AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTGAACC CCAACAGATT CGAAGAAGGT [5381] Kokia.drynar AGGAGCAAGA GTTTGTGAGG CTTCTAGGAT CATTGGTATT GATCTGAACC CCAACAGATT CGAAGAAGGT [5377] [ 5470 5480 5490 5500 5510 5520 5530] [ . . . . . . .] A_genome AGCTTTAGTT TAATTGATAT TTACATTAAA TACTCAAA-G ACTGGTTATG TTTTAGATTA AACAAAGTTG [5457] B_genome AGCTT-ATTT TAATTGATAT TTACATTAAA TACTCAAA-G ACTGGTTATG TTTTAGATTA AACAAAGTTG [5509] C_genome AGCTTTAGTT TAATTGATAT TTACATTAAA TACTCAAA-G ACTGGTTATG TTTTAGATTA AACAAAGTTG [5449] D_genome AGGTTTATTT TAATTGATAT TTACATTAAA CACTCAAA-G ATTGGTTATG TTTCAGATTA AACAAAGTTG [5448] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5503] F_genome AGCTTTAGTT TAATTGATAT TTACATTAAA TACTCAAA-G ACTGGTTATG TTTTAGATTA AACAAAGTTG [5505] G_genome AGCTTTAGTT TAAT-GATAT TTACATTAAA TACTCAAA-G ACTGGTTATG TTTTAGATTA AACAAAGTTG [5491] Gossyp.kirkii ATCTTTAGTT TAATTGTTCT TTTCATTAAG CACTCAAAAG ACTGGTTATA TTCCAGATTA AACAAAGTTG [5451] Kokia.drynar ATCTTTAGTT TAATTGTTCT TTTCATTAAG CACTCAAA-G ACTGGTTATG TTCCAGATTA AACGAAGTTG [5446] [ 5540 5550 5560 5570 5580 5590 5600] [ . . . . . . .] A_genome CAAAATTAAT CATTTTTCTT CTTGCAGCCA AGAAATTTGG TTGTACCGAG TTTGTGAACC CAAAAGATCA [5527] B_genome CAAAATTAAT CATTTTTCTT CTTGCAGCCA AGAAATTTGG TTTTACCGAG TTTGTGAACC CAAAAGATCA [5579] C_genome CAAAATTAAT CATTTTTCTT CTTGCAGCCA AGAAATTTGG TTGTACCGAG TTTGTGAACC CAAAAGATCA [5519] D_genome CAAAATTAAT CATTTTTCTT CTTGCAGCCA AGAAATTTGG TTGTACTGAG TTTGTGAACC CAAAAGATCA [5518] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5573] F_genome CAAAATTAAT CATTTTTCTT CTTGCAGCCA AGAAATTTGG TTGTACCGAG TTTGTGAACC CAAAAGATCA [5575] G_genome CAAAATTAAT CATTTTTCTT CTTGCAGCTA AGAAATTTGG TTCTACCGAA TTTGTGAACC CAAAAGATCA [5561] Gossyp.kirkii CAAAATTAAT ----TTTCTT CTTGCAGCCA AGAAATTTGG TTGTACCGAG TTTGTGAACC CGAAAGATCA [5517] Kokia.drynar CAAAATTAAT AATTTTTCTT CTTGCAGCCA AAAAATTTGG TTGTACCGAG TTTGTGAACC CGAAAGATCA [5516] [ 5610 5620 5630 5640 5650 5660 5670] [ . . . . . . .] A_genome TAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTACTGAA --CTTTGAGC [5595] B_genome TAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTACTAAA --CTTTGAGC [5647] C_genome TAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTACTGAA --CTTTGAGC [5587] D_genome CAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTACTGAA --CTTTGAGC [5586] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5643] F_genome TAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTACTGAA --CTTTGAGC [5643] G_genome TAATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CCTTAGTGAA --CTTTGAGC [5629] Gossyp.kirkii CGATAAACCT GTTCAAGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA CATAACTGAA AACTTTGAGC [5587] Kokia.drynar CAATAAACCT GTTCAGGAGG TTGGATTCCT TGAAAACTCA ATCCCATATA TATAACTGAA AACTTTGAGC [5586] [ 5680 5690 5700 5710 5720 5730 5740] [ . . . . . . .] A_genome ACGTAAAGTC ATTAAAGATT CTGGCATGAC CATTTATTTA GTTAGGTCAT CTTACATAAC AAAACTTGCA [5665] B_genome ACGTAACGTC ATTAAAGATT CTGGCATGAC CATATATTTA GTTAGGTCAT CTTACATAAT AAAACTTGCA [5717] C_genome GCGTAAAGTC ATTAAAGATT CTGGCATGAC CATATATTTA G----GTCAT CTTACATGAT AAAACTTGCA [5653] D_genome ATGTAAAATC ATTAAAGATT CTGGCATGAC CATATATTTA GTTAGGTCAT CTTACATAAT AAAACTTGCA [5656] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5713] F_genome ACGTAAAGTC ATTAAAGATT CTGGCATGAC CATATATTTA GTTAGGTCAT CTTACATAAT AAAACTTGCA [5713] G_genome ACGTAAAGTC ATTAAAGATT CTAGCATGAC CATATATTTA G----GTCAT CTTACATAAT AAAACTTGCA [5695] Gossyp.kirkii ACATCAAATC ATTAAAGATT CTGGCATGAC CATACACTTA GTTAGGTCAT CTTACATAAT AAAACCTGCA [5657] Kokia.drynar ACGTCAAATC ATTAAAGATT CTGGCATGAC CATACACTTA GTTAGGTCAT CTTACATAAT AAAACCTGCA [5656] [ 5750 5760 5770 5780 5790 5800 5810] [ . . . . . . .] A_genome TTGTTG---- --CTGAGTTT TCAAGTAGAT AGATAATTTT GTTTCTTGTT GTTCTAACAA ATAGGTGATT [5729] B_genome TTGTTG---- --CTGAGTTT TCAAGCAGAT AGATAATTTT GTTTCTTGTT GTTCTAACAA ATAGGTGATT [5781] C_genome TTGTTG---- --CTGAGTTT TCAAGCAGAT AGATAATTTT GTTTCTTGTT GTTCTAAGAA ATAGGTGATT [5717] D_genome TTGTTGGAGT TGCTGAGTTT TCAAGCAGAT AGATAATTTT GTTTCTTGTC GTTCTAAAAA ATAGGTGATT [5726] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5783] F_genome TTGTTG---- --CTGAGTTT TCATGTAGAT AGATAATTTT GTTTCTTGTT GTTCTAACAA ATAGGTGATT [5777] G_genome TTGTTG---- --CTGAGTTT TCAAGCAGAT AGATAATTTT GTTTCTTGTT GTTCTAACAA ATAGGTGATT [5759] Gossyp.kirkii TTGTTGGAGT TGCTGAGTTT TCAAACAGAC GGATAATTTT GTTACTTGTT ATTCTAACAA ATAGGTGATT [5727] Kokia.drynar TTGTTGGAGT TTCTGAGTTT TCAAACAGAC AGATAATTTT GTTACATGTT GTTCTAACAA ATAGGTGATT [5726] [ 5820 5830 5840 5850 5860 5870 5880] [ . . . . . . .] A_genome TCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAG CACCCAGGCC ATGGTTTCTG [5799] B_genome GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAG CACCCAGGCC ATGGTTTCTG [5851] C_genome GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAG CACCCAGGCC ATGGTTTCTG [5787] D_genome GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAG CACCCAGGCC ATGGTTTCTG [5796] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [5853] F_genome GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAG CACCCAGGCC ATGGTTTCTG [5847] G_genome GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACGGGGAC CACCCAGGCC ATGGTTTCTG [5829] Gossyp.kirkii GCGGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACAGGGAG CATCCAGGCC ATGATTTCTG [5797] Kokia.drynar GCAGAGATGA CTGGAGGAGG AGTTGATTGC AGTATTGAAT GTACAGGGAG CATCCAGGCC ATGATTTCTG [5796] [ 5890 5900 5910 5920 5930 5940 5950] [ . . . . . . .] A_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCCTCATTC TTAGACATTT TATTTTAAAC [5869] B_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCAC------ --CTTCATTC ATAGACATTT TATTTTAAAC [5913] C_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATAGACATTT TATTTTAAAC [5857] D_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATAGACATTT TATTTTAAAC [5866] E_genome ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ????????AC [5923] F_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATAGACATTT TATTTTAAAC [5917] G_genome CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATAGACATTT TATTTTAAAC [5899] Gossyp.kirkii CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATGGACATTT TATTTTAAAC [5867] Kokia.drynar CATTTGAATG TGTCCATGAT GTAATTACCA GCACAAACTT CTCTTCATTC ATGGACATTT TATTTTAAAC [5866] [ 5960 5970 5980 5990 6000 6010 6020] [ . . . . . . .] A_genome TTCAATACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGGAAT [5939] B_genome TTCAATACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TCCATAAGTG ATGAAGGAAT [5983] C_genome TTCAACACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGGAAT [5927] D_genome TTCAACACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGGAAT [5936] E_genome TTCAACACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGGAAT [5993] F_genome TTCAATACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATTAGTG ATGAAGGAAT [5987] G_genome TTCAACACGA CGAGGAACCC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGGAAT [5969] Gossyp.kirkii TTCAACACGA CGAGGAAACC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGG-AT [5936] Kokia.drynar TTCAACACGA CAAGGAAACC ACTCATCCTT CTGCTCTCTG TGCCCAAGCC TGCATAAGTG ATGAAGG-AT [5935] [ 6030 6040 6050 6060 6070 6080 6090] [ . . . . . . .] A_genome TGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCC-GTAAA AACACATCAA [6008] B_genome TGCATCAAGG AAACAAAAGA AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA AACACATCAA [6053] C_genome TGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA -CCACATCAA [5996] D_genome TGCGTCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA AACACATCAA [6006] E_genome TACATCAAGG AAACAAAAGG AAAAACAGAT AAGTAGAATA AAGGATTTAA GCCCTATAAT AACACATCAA [6063] F_genome TGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA AACACATCAA [6057] G_genome TGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA -ACACATCAA [6038] Gossyp.kirkii AGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA AACACATCAA [6006] Kokia.drynar TGCATCAAGG AAACAAAAGG AAAAACAAAT AAGTAGAATA AAGGATTTAA GCCCTGTAAA AGCACATCAA [6005] [ 6100 6110 6120 6130 6140 6150 6160] [ . . . . . . .] A_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAACATGTC ACGAACCTT- ---------- ---CCATAAC [6064] B_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAACATGTC ACAAACCTT- ---------- ---CCATAAC [6109] C_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAACATGTC ACAAACCTT- ---------- ---CCATAAC [6052] D_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAGCATGTC ACAAACCTT- ---------- ---CCATAAC [6062] E_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAGCATGTC ACAAACCTT- ---------- ---CCATAAC [6119] F_genome ATTCTGGAAC AATGCAGAAG TTAGCAGTGG CGAACATGTC ACAAACCTT- ---------- ---CCATAAC [6113] G_genome ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAACATGTC ACAAACCTT- ---------- ---CCATAAC [6094] Gossyp.kirkii ATACTGGAAC AATGCAGAAG TTAGCAGTGG TGAGCATGTC ACAAACCTT- ---------- ---CCATAAC [6062] Kokia.drynar ATACTGGAAC AATGCAGAAG TTAACAGTGG TGAGCATGTC ACAAACCTTC CAATACCTCC CTTCCATAAC [6075] [ 6170 6180 6190 6200 6210 6220 6230] [ . . . . . . .] A_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAT [6134] B_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTATTTATGA ACAAGGAAAA TAAAAGGAAA [6179] C_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAA [6122] D_genome CGCCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAA [6132] E_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGTAAA TAAAAGGGAA [6189] F_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAA [6183] G_genome CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAA [6164] Gossyp.kirkii CACCAAAACC CCACCTGGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAATGGGAA [6132] Kokia.drynar CACCAAAGCC CCACCTAGAC AATCACATAA TAAAAGTAAA TTGTTTATGA ACAAGGAAAA TAAAAGGGAA [6145] [ 6240 6250 6260 6270 6280 6290 6300] [ . . . . . . .] A_genome ATCTAAAACC ATAACACAAT AATCAACAAT GACTTACGTG AAAACATAGC CATTCATGTC CACAGCAACT [6204] B_genome ATCTAAAACC TTAACACAAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC CACGGCAACT [6249] C_genome ATCTAAAACC TTAACACAAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC CACAGCAACT [6192] D_genome ATCTAAAACC TTACCACAAT AATCAACAAT GACTTACGTG TAAACAAAGC CATTTGTGTC CACAGCAACT [6202] E_genome ATCTAAAACC TTAACACAAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC AACAGCAACT [6259] F_genome ATCTAAAACC TTAACAAAAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC CACAGCAACT [6253] G_genome ATCTAAAACC TTAACACAAC AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTT CACAGCAACT [6234] Gossyp.kirkii ATCTAAAACC TTACC--AAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC CACAGCAACT [6200] Kokia.drynar ATCTAAAACC TTACC--AAT AATCAACAAT GACTTACGTG TAAACATAGC CATTCGTGTC CACAGCAACT [6213] [ 6310 6320 6330 6340 6350 6360 6370] [ . . . . . . .] A_genome GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGAGAGGGAA [6273] B_genome GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GAATAGGGAA [6318] C_genome GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGATAGGGAA [6261] D_genome GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGATAGGGAA [6271] E_genome GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGATAGGGAA [6328] F_genome GCATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGATAGGGAA [6322] G_genome GGATGCACAA ATTGGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACCAG GGATAGGGAA [6303] Gossyp.kirkii GGATGCACAA ATTAGAAAAG TAAACAATGA GATGAAT-GT TTAAGTAAAA GAAGAACTGG GGATAGGGAA [6269] Kokia.drynar GGATGCACAA ATTAGAAAAG TAAACAAT-- ---GAATTGT TTAAGTAAAA ---GAACTGG GGATAGGGAA [6275] [ 6380 6390 6400 6410 6420 6430 6440] [ . . . . . . .] A_genome GGGGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6343] B_genome GGGGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6388] C_genome GGGGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6331] D_genome GGGAACGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6341] E_genome GGGGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6398] F_genome GGAGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATAAAC CTGTATGGTT [6392] G_genome GGGGATGACC AAAAGATGAA AGAGCAAATG AACATGAAAG AGAGCAGGCA TATCATGAAC CTGTATGGTT [6373] Gossyp.kirkii GGGGATGACC AAAAGATGAA AGAGCAGATG AACATGAAAG AGAGCAAGCA TATCATGAAC CTGTATGGTT [6339] Kokia.drynar GGGGATGACC AAAAGATGAA AGAGCAGATG AACATGAAAG AGAGCAAGCA TATCATGAAC CTGTATGGTT [6345] [ 6450 6460 6470 6480 6490 6500 6510] [ . . . . . . .] A_genome TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCTATAG CTCTAGGGCG AGGTTGAGAT [6413] B_genome TGTTCCACAG GCAACTTTGA CAATAGTTTC TCCAGAAAGA GTAGCTATAG CTCTAGGGCG AGGTTGAGAT [6458] C_genome TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCTATAG CTCTAGGGCG AGGTTGAGAT [6401] D_genome TGTTCCACAG GCAACTTTGA TAATAGTTTC CCCAGAAAGA GTAGCTATAG CTCTAGGGCG AGGTTGAGAT [6411] E_genome TGTTCCACAG GCAACTTTGA CAATAGTTGC CCCAGAAAGA GTAGCTATAG CTCTAGGGCG AGGTTGAGAT [6468] F_genome TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCTATAG CTCTAAGGCG AGGTTGAGAT [6462] G_genome TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCAATAG CTCTAGGGCG AGGTTGAGAT [6443] Gossyp.kirkii TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCTATAA CTCTAGGGCG AGGTTGAGGT [6409] Kokia.drynar TGTTCCACAG GCAACTTTGA CAATAGTTTC CCCAGAAAGA GTAGCTATAA CTCTAGGGCG AGGTTGAGGT [6415] [ 6520 6530 6540 6550 6560 6570 6580] [ . . . . . . .] A_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGCGTAT AGGTATGATG CAAACACCCG [6483] B_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGTGTAT AGGTATGATG CAAACACCCG [6528] C_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGCGTAT AGGTATGATG CAAACACCCG [6471] D_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGCGTAT AGGTATGATG CAAACACCCG [6481] E_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGTGTAT AGGTATGATG CAAACACCCG [6538] F_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGCGTAT AGGTATGATG CAAACACCCG [6532] G_genome TCATAAACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGCGTAT AGGTATGATG CAAACACCCG [6513] Gossyp.kirkii TCATAGACAA GCCTCACCGA GCTATCCTTG GCATTATACT ACAAGCGTGT AGGTATTATG CAAACACCCA [6479] Kokia.drynar TCATAGACAA GCCTCACCGA GCTATCCTTG GCATTATACT GCAAGGGTGT AGGTATGATG CAAACACCCA [6485] [ 6590 6600 6610 6620 6630 6640 6650] [ . . . . . . .] A_genome TGGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAACCACT TCTAGATATC AAATAACACA [6553] B_genome TGGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAACAACT TCTAGATATC AAATAACACA [6598] C_genome TGGAGAAAAG CAAGTCAATA GCAAC????? ?????????? ?????CACCT TCTAGATATC AAATAACACA [6541] D_genome TGGAGAAAAG CAAGTCAATA GCAACTAGAT TAGAGAACTG CTTAACAACT TCTAGATATC AAATAACACA [6551] E_genome TAGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAACAACT TCTAGATATC AAATAACACA [6608] F_genome TGGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAACAACT TCTAGATATC AAATAACACA [6602] G_genome TGGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAACACCT TCTAGATATC AAATAACACA [6583] Gossyp.kirkii TTGAGAAAAG CAAGTCAATA GCAACTAGGT TAGAGAACTG CTTAAAAAAT TCTAGATATC AAATAACACA [6549] Kokia.drynar TTGTGAAAAG CAAGTCAATA GCAACTACGT TAGAGAACTG CTTAAAAAAT TCTAGATATC AAATAACACA [6555] [ 6660 6670 6680 6690 6700 6710 6720] [ . . . . . . .] A_genome TATAAAAGTG GTGTAAAATC AAAAACTCAG GATCTAATAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6623] B_genome TATAAAAGTG GTGTAAAATA AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6668] C_genome TATAAAAGTG GTATAAAATC AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6611] D_genome TATAAAAGTG GTGTAAAATC AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6621] E_genome TATAAAAGTG GTGTAAAATC AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATTAAT TTTAACTTAG [6678] F_genome TATAAAAGTG GTGTAAAATC AAAAACTCAG GTTCTAAGAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6672] G_genome TATAAAAGTG GTGTAAAATC AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATTAAT TTGAACTTAG [6653] Gossyp.kirkii TATAAAAGTG GTGTAAAATA AAAAACTCAG GAACTAAGAA AAGAAATTGT CTTGATCAAT TTGAACTTAG [6619] Kokia.drynar TATAAAAGTG GTGTAAAATC AAAAACTCAG GATCTAAGAA AAGAAATTGT CTTGATCAAT TTGAACTT-- [6623] [ 6730 6740 6750 6760 6770 6780 6790] [ . . . . . . .] A_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAA CGAATGTGGT AGTAGGAAAC AAATGCATAT [6693] B_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAA CGAATGTGGT AGTAGGAAAC AAATGCATAT [6738] C_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAG CGAATGTGGT AGTACGAAAC AAATGCATAT [6681] D_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAA CGAATGTGGT AGTAGGAAAC AAATGCATAT [6691] E_genome AGGGAGAAAA AAAGGTAAAA GAAATGCAAA AGATACTAAA CGAATGTGGT TGTAGGAAAC AAATGCATAT [6748] F_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAA CGAATGTGGT AGTAGGAAAC AAATGCATAT [6742] G_genome AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACTAAG CGAATGTGGT AGTAGGAAAC AAATGCATAT [6723] Gossyp.kirkii AGGGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACAAAA CAGATGTGGT AGTAGGAAAA AAATGAATAT [6689] Kokia.drynar --GGAGAAAA TAAGGTAAAA GAAATGCAAA AGATACAAAA CAGATGTGGT AGTAGGAAAC AAATGCATAT [6691] [ 6800 6810 6820 6830 6840 6850 6860] [ . . . . . . .] A_genome AGAGAAGTAA CAGCAGCAGT ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6763] B_genome AAAGAAGTAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AATTTGATCA ATGTAAGAAT GTGCTAAAAA [6808] C_genome AAAGAAGTAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6751] D_genome AAAGAAGTAA CACCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6761] E_genome AAAGAAGTAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6818] F_genome AAAGAAGTAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCC ATGTAAGAAT GTGCTAAAAA [6812] G_genome AAAGAAGTAA CAGCAGCAGC ATAAGTTAAA TATTAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6793] Gossyp.kirkii AAAGAAGCAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTAAAAA [6759] Kokia.drynar AAAGAAGCAA CAGCAGCAGC ATAAGTTAAA TATGAAGAAC AAATTGATCA ATGTAAGAAT GTGCTGAAAA [6761] [ 6870 6880 6890 6900 6910 6920 6930] [ . . . . . . .] A_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTCACTT AACAAGGCTC CCTTTATTTG [6833] B_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6878] C_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6821] D_genome CACAATTTTC ATAAGAGTAG GATAGCTTTT TGCTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6831] E_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6888] F_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTCACTT AACAAGGCTC CCTTTATTTG [6882] G_genome CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6863] Gossyp.kirkii CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCTTTACTT AACAAGGCTC CCTTTATTTG [6829] Kokia.drynar CACAATTTTT ATAAGAGTAG GATGGCTTTT TGGTGTTTTG GCCATTACTT AACAAGGCTC CCTTTATTTG [6831] [ 6940 6950 6960 6970 6980 6990 7000] [ . . . . . . .] A_genome AGCCTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6903] B_genome AGCTTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATGGAAAAGC AAAAACTATA [6948] C_genome AGCTTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6891] D_genome AGCTTTTGCT GCTAGCTTAG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6901] E_genome AGCTTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6958] F_genome AGCTTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6952] G_genome AGCTTTTGCT GCTAGCTTTG TACATCCTCA CATTTTGCAA AAGAGTAAAA ATTGAAAAGC AAAAACTATA [6933] Gossyp.kirkii AACTTTTGCT ACTAGCTCTG TACATCCTCA CATTTTGCAA AAAAGTAAAA AGTGAAAAGC AAAAACTATA [6899] Kokia.drynar AGCTTTTGCT ACTAGCTCTG TACATCCTCA CATTTTGCAA AAGAGTAAAA AGTGAAAAGC AAAAACTATA [6901] [ 7010 7020 7030 7040 7050 7060 7070] [ . . . . . . .] A_genome TGTCATTAAA ATCAAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAA [6973] B_genome TGTCATTAAA ATCAAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ACTATGTGAT GCAATATAAA [7018] C_genome TGTCATTAAA ATCGAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAA [6961] D_genome TGTCATTAAA ATCGAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAA [6971] E_genome TGTCATTAAA ATCGAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAC [7028] F_genome TGTCATTAAA ATCAAGCACA TTTCCAAACA ATAGCTCTGA TTCAGGCACA ATTATGTCAT GCAATATAAA [7022] G_genome TGTCATTAAA ATCGAGCACA TTTCCAAACC ATAGCTCTGA TTCAGGCACA ATTATGTGAT GTAATATAAA [7003] Gossyp.kirkii TGTCATTAAA AACGAACACA TTGCCAAACA ATCACTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAA [6969] Kokia.drynar TGTCATTAAA ATCGAACACA TTGCCAAACA ATCACTCTGA TTCAGGCACA ATTATGTGAT GCAATATAAA [6971] [ 7080 7090 7100 7110 7120 7130 7140] [ . . . . . . .] A_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTGTTTTTGT [7041] B_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTTCT ACACACTTAT AAGATGTTTC TTGTTTTTGT [7088] C_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTGTTTTTTT [7029] D_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTGTTTTTGT [7039] E_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTTTTTTTCT [7096] F_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTGTTTTTGT [7090] G_genome TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTAT AAAATGTTTC TTGTTTTTGT [7071] Gossyp.kirkii TGAAACTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTGT AAAATGTTTC TTGTTTTTGC [7037] Kokia.drynar TGAAGCTTCT ATTACCTTTA AAATAAAGCT TTTAATTT-- ACACTCTTGT AAAATGTTTC TTGTTTTTGC [7039] [ 7150 7160 7170 7180 7190 7200 7210] [ . . . . . . .] A_genome ATCCAAATCC CTTTCTTCTT TTT-ATTTAT TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7110] B_genome ATCCAAATCC CTTTCTACTT TTT-ATTTA- TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7156] C_genome ATCCAAATCC CTTTCTTCTT TTT-ATTTA- TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7097] D_genome ATCCAAATCC CTTTCTTCTT TTTTA----- TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7104] E_genome ATCCAAATCC CTTTCTTCTT T--------- TTTTTTTCTT TGCTACTTGC AAAGTAGCAA AATCAACAAT [7157] F_genome ATCCAAATCC CTTTCTTCTT TTT-ATT--- TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7156] G_genome ATCCAAATCC CTTTCTTCTT TTT-ATTTAT TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7140] Gossyp.kirkii ATCCAAATCC CTTTCT-CTT T--------- TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7097] Kokia.drynar ATCCAA???C CTTTCT---- ----ATTT-T TTTTTTTCTT TTTTACTTGC AAAGTAGCAA AATCAACAAT [7100] [ 7220 7230 7240 7250 7260 7270 7280] [ . . . . . . .] A_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7180] B_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7226] C_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7167] D_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7174] E_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7227] F_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7226] G_genome CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGAGA GCAATTCGAA TGGACCTGAG GATGCAGCAC [7210] Gossyp.kirkii CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGACA GCAATTCGAA TGGACCTTAG GATGCAGCAC [7167] Kokia.drynar CAAAAGGGGC TTAAATAACT TTCTATGGGA TAGGATGACA GCAATTCGAA TGGACCTTAG GATGCAGCAC [7170] [ 7290 7300 7310 7320 7330 7340 7350] [ . . . . . . .] A_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG CAACTGGATC TTTCTTGTCG [7250] B_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG TAACTGGATC TTTCTTGTCG [7296] C_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG CAACTGGATC TTTCTTATCG [7237] D_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG CAACTGGATC TTTCTTGTCG [7244] E_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TGTGTCCTTG CAACTGGATC TTTCTTGTCG [7297] F_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG CAACTGGATC TTTCTTGTTG [7296] G_genome ATCTTTGACC AAGGGGCAAT CACTATGCTA GAGCAAATGG TATGTCCTTG CAACTGGATC TTTCTTGTCG [7280] Gossyp.kirkii ATCTTTGACC AAGGGGCTAT CACTATGCTA GAGCAAATGG TATGTCCTCG CAACTGGATC TTTCTTGTCG [7237] Kokia.drynar ATCTTTGACC AAGGGGCTAT CACTATGCTA GAGCAAATGG TATGTCCTCG CAACTGGATC TTTCTTGTCG [7240] [ 7360 7370 7380 7390 7400 7410 7420] [ . . . . . . .] A_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT TATCCCAACA AGTATTATTA [7320] B_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT CAACCCAACA ACTATTATTA [7366] C_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATTTT GTGTAAAAAT CAACCCAACA AATATTATTA [7307] D_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT CAACCCAACA AATATTATTA [7314] E_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT CAACCCAACA AATATTATTA [7367] F_genome ATTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTA GTGTAAAAAT TATCCCAGCA AATATTATTA [7366] G_genome ACTGGCCCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT CAACCCAACA AATATTATTA [7350] Gossyp.kirkii ATTGGCTCAT TATCTTGATT CTTGAATACT TGTGAATGTT GTGTAAAAAT CAACCCAACA AATATTCTCA [7307] Kokia.drynar ATTGGCTCAT TATCTTGATT CTTGAATACT TGTGAAT?TT GTGTAAAAAT CAACCCAACA AATATTCTCA [7310] [ 7430 7440 7450 7460 7470 7480 7490] [ . . . . . . .] A_genome GAAAAAGAAG TTCAGTTTCA TTTACATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTGTGATTT [7390] B_genome GAAAAAGAAG TTCATTTTCA TTTACATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTGTGATTT [7436] C_genome GAAAAAGAAG TTCATTTTCA TTTACATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTTTGATTT [7377] D_genome GAAAAAGAAG TCCATTTTCA TTTACATGGT CAGGTAGAAG TTATTCCTAT TTATGCCGTG CTTGTGATTT [7384] E_genome GAAAAAG--- TTCATTTTCA TTTACATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTCTGGTTT [7434] F_genome GATAAAGAAG TTCATTTTCA TTTACATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTGTGATTT [7436] G_genome GAAAAAG--- TTCATTTTCA TTTGCATGGT CAGATAGAAG GTATTCCTAT TTATGCTGTG CTTTTGATTT [7417] Gossyp.kirkii GAAAAAAAAG ---------- ---------- ---------- TTATTCCTAT TTATGCTGTG CTTGTGATTT [7347] Kokia.drynar GAAAAAAAAG ---------- ---------- ---------- TTATTCCTGT TTATGCTGTG CTTGTGATTT [7350] [ 7500 7510 7520 7530 7540 7550 7560] [ . . . . . . .] A_genome TAATTATATG TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7460] B_genome TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7506] C_genome TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7447] D_genome TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7454] E_genome TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTT TTCATCATTG [7504] F_genome TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7506] G_genome TAATTATATT TAGAATGAAC TGATAAACGT AGCTGTTTTT TGGTCTTGCC TACATTTTTG TTCATCATTG [7487] Gossyp.kirkii TAATTATATT TAGAATGAAC TGATAAACAT AGTTGTTTTT TTATCTTGCC TACATTTTTG TTCATCATTG [7417] Kokia.drynar TAATTATATT TAGAATGAAC TGATAAACAT AGCTGTTTTT TTATCTTGCC TACATTTTTG TTCATCATTG [7420] [ 7570 7580 7590 7600 7610 7620 7630] [ . . . . . . .] A_genome TTTTGCTCCA TAAGTCATAA CGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7530] B_genome TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7576] C_genome TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7517] D_genome TTTTGCTCCA TAAGTCATAA TGTCTTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7524] E_genome TTTTGCTCCA TAAGTCATAA TGTATTGCAT CTGGGGACAA ATATCTAAAT GATTGCTATG ATTTGTTCAA [7574] F_genome TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCCATG ATTTGTTCAA [7576] G_genome TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7557] Gossyp.kirkii TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7487] Kokia.drynar TTTTGCTCCA TAAGTCATAA TGTATTGCAT TTGGGGACAA ATATCTAAAT CATTGCTATG ATTTGTTCAA [7490] [ 7640 7650 7660 7670 7680 7690 7700] [ . . . . . . .] A_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7600] B_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7646] C_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7587] D_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7594] E_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7644] F_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGACTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7646] G_genome TTAGTGGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7627] Gossyp.kirkii TTAGTAGTGC TGATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7557] Kokia.drynar TTAGTAGTGC TAATTGCTGT TTTTGTCAGA TAAGGCTTCA CATAATTGCC ATGCATGAAT TATGTGAATA [7560] [ 7710 7720 7730 7740 7750 7760 7770] [ . . . . . . .] A_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACATCA [7670] B_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACATCA [7716] C_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATTG AGCAGATGAA CAAAACATCA [7657] D_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAACATCG AGCAGATGAA CAAAACATCA [7664] E_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACATCA [7714] F_genome CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACTTCA [7716] G_genome CACCAAGGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATTG AGCAGATGAA CAAAACATCA [7697] Gossyp.kirkii CACCAAAGGC GAGGGCTTCT CTGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACATCA [7627] Kokia.drynar CACCAAAGGC GAGGGCTTCT CCGAGGGATT TGATGCACAT CTAAATATCG AGCAGATGAA CAAAACATCA [7630] [ 7780 7790 7800 7810 7820 7830 7840] [ . . . . . . .] A_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TTCAACAGAA AAGGAGTTCA [7740] B_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7786] C_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7727] D_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7734] E_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7784] F_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7786] G_genome GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7767] Gossyp.kirkii GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7697] Kokia.drynar GTTGAGCTAT TCCAAATGTA TGATGATCAC AGGAAGAAAG GAATTAATGT TCCAACAGAA AAGGAGTTCA [7700] [ 7850 7860 7870 7880 7890 7900 7910] [ . . . . . . .] A_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7810] B_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7856] C_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7797] D_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7804] E_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7854] F_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7856] G_genome GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCGGG GTATAAAGTA AGTCGATACA AATGTTGAAT [7837] Gossyp.kirkii GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCAGG GTATAAAGTA AGTCAATACA AATGTCGAAT [7767] Kokia.drynar GAGGTTATTA TGCACTTCTC AAACTTGACA AGCATCCAGG GTATAAAGTA AGTCGATACA AATGTCGAAT [7770] [ 7920 7930 7940 7950 7960 7970 7980] [ . . . . . . .] A_genome CAATTATTCA AACTTCATCA ACTTTA-TTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7879] B_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7926] C_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7867] D_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7874] E_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7924] F_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7926] G_genome CAATTATTCA AACTTCATCA ACTTTATTTT TGAAAATAAG CACTCCCCAC TAGGTTGAAC CTGGGTTTTA [7907] Gossyp.kirkii AAATTATTCA AACTTCATCA ACTTTATCTT TGAAAAT??? ?????????? ?????????? ???GGTTTTA [7837] Kokia.drynar AAATTATTCA AACTTCATCA ACTTTATCTT TGAAAAT??? ?????????? ?????????? ???GGTTTTA [7840] [ 7990 8000 8010 8020 8030 8040 8050] [ . . . . . . .] A_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7949] B_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7996] C_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7937] D_genome CAGCTATTGC CATTAGGAAA ATTGTGAATA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7944] E_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7994] F_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGA AGATGCTGAG CCTATGGCAA AACCTTCCTC [7996] G_genome CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCTC [7977] Gossyp.kirkii CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCAATGGCAA AACCTTCCCC [7907] Kokia.drynar CAGCTATTGC CATTAGGAAA ATTGTGAAGA CAGAAATGGT AGATGCTGAG CCTATGGCAA AACCTTCCCC [7910] [ 8060 8070 8080 8090 8100 8110 8120] [ . . . . . . .] A_genome ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8019] B_genome ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8066] C_genome ATTTGCTCCT ATAGAATTTT GGACATGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8007] D_genome ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8014] E_genome ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8064] F_genome ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8066] G_genome ATTTGCTCCT ATAGAATTTT GGACATGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [8047] Gossyp.kirkii ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTAGTGC AATTTTTTAT [7977] Kokia.drynar ATTTGCTCCT ATAGAATTTT GGACTTGGGG TGGTATCTTT CTTGCATCAT TTGTTTGTGC AATTTTTTAT [7980] [ 8130 8140 8150 8160 8170 8180 8190] [ . . . . . . .] A_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8089] B_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8136] C_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8077] D_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8084] E_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8134] F_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCAT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8136] G_genome CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCCACTGTG CTAGGCTACA [8117] Gossyp.kirkii CCCACAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTACTTGC TTCTACTGTG CTAGGCTACA [8047] Kokia.drynar CCAATAGCAT TAGGGACAAC TGCTCGAACA TGCCTTCCCT TCCTCCTTGC TTCTACTGTG CTAGGCTACA [8050] [ 8200 8210 8220 8230 8240 8250 8260] [ . . . . . . .] A_genome TGGTTGGTTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATATGGACAG GTTTTTCCTA [8159] B_genome TGGTTGGTTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATATGGACAG GTTTTTCCTA [8206] C_genome TGGTTGGGTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATATGGACAG GTTTTTCCTA [8147] D_genome TGGTTGGTTC GGGGTAAGTT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATATGGACAG GTTTTTCCTA [8154] E_genome TGGTTGGTTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATATGGACAG GTTTTTCCTA [8204] F_genome TGGTTGGTTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATCC ATATGGACAG GTTTTTCCTA [8206] G_genome TGGTTGGGTC GGGGTAAATT TTCATTTTTT TTCATCTTTA CAGCAGATTC ATACGGACAG GTTTTTCCGA [8187] Gossyp.kirkii TGGTTGGTTC GGGGTAAATT TCCATTTTTA TTCATCTTTA CAACAGATTT ATATGGACAT GTTTTTCCTA [8117] Kokia.drynar TGGTTGGTTC GGGGTAAATT TCCATTTTTT TTCATCTTTA CAACAGATTT ATATGGACAT GTTTTTCCTA [8120] [ 8270 8280 8290 8300 8310 8320 8330] [ . . . . . . .] A_genome ATAACAACTA TAACATAATT TTATGAAATT TGTGCTAATT TGTATTCTTC TGATTTCAGG TTGCCATCTG [8229] B_genome ATAACAACTA TAACATAATT TTATGAAATT TGTGCTAATT TGTATTCTTC TGATTTCAGG TTGCCATCTG [8276] C_genome ATAACAACTA TAACATAATT TTATGAAATT TGTGCTAATT TGTATTCTTC TGATTTCAGG TTGCCATCTG [8217] D_genome ATAACAACTA TAACATAATT TTATGAAATT TGTGCTAATT TGTATTCTTC TGATTTCAGG TTGCCATCTG [8224] E_genome ATAACAACTA TAACATAATT TTATGAAAAT TGTGCTAATT TGGATTCTTC TGATTTCAGG TTGCCATCTG [8274] F_genome ATAACAACTA TAACATAATT TTGTGAAATT TGTGCTAATT TTTATTCTTC TGATTTCAGG TTGCCATCTG [8276] G_genome ATAACAACTA TAACATAGTT TTATGAAATT TGTGCTAATT TGTATTCTTC TGATTTCAGG TTGCCATCTG [8257] Gossyp.kirkii ATAACAACTA TAACATAATT TTATGAAATT TGTACCAATT TGTACTCTTC TGATTTCAGG TTGCCATCTG [8187] Kokia.drynar ATGACAACTA TAACATAATT TTATGAAATT TGTACCAATT TGTACTCTTC TGGTTTCAGG TTGCCATCTG [8190] [ 8340 8350 8360 8370 8380 8390 8400] [ . . . . . . .] A_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCATTTGG [8299] B_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8346] C_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8287] D_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8294] E_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8344] F_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8346] G_genome CTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8327] Gossyp.kirkii GTGTGAAAAA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8257] Kokia.drynar GTGTGAAACA AGTTCTTCAT CCGATTATTT GCTGTGCACT CTCAGCAGAT CTTGCAGCAG TGGCTTTTGG [8260] [ 8410 8420 8430 8440 8450 8460 8470] [ . . . . . . .] A_genome GTACATTTCA CAGTCGGGAA TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8369] B_genome GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8416] C_genome TTACATTTCA CAGTCGGGAG TTGATGCAGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8357] D_genome GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TGTTCTTTAA [8364] E_genome GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8414] F_genome GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8416] G_genome TTACATTTCA CAGTCGGGAG TTGATGCAGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT TATTCTTTAA [8397] Gossyp.kirkii GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT AGTTCTTTAA [8327] Kokia.drynar GTACATTTCA CAGTCGGGAG TTGATGCGGT ATTAGGTATT ATTTAAAAGC TGATCTTTCT AGTTCATTAA [8330] [ 8480 8490 8500 8510 8520 8530 8540] [ . . . . . . .] A_genome TTAAAGGAAA TCCAACATGG GAGTGTCACA AATGCATTCC ACGCTCGAAT CGAAACCTGC CTAGCAG-AA [8438] B_genome TTAAAGGAAA TCCAACATGG GAGTGTCACA AATGCATTCC ATCCTCGAAT CGAAACCTCC CTAAAAG-AA [8485] C_genome TTAAAGGAAA ACC??????? ?????????? ?????????? ?????????T CGAAACCTGC CTAGCAGAAA [8427] D_genome TTAAAGGAAA TCCAACATGG GAGTGTCACA AATGCATTCC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8433] E_genome TTAAAGGAAA TCCAACATGG GAGTGTCACA AATGCATCGC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8483] F_genome TTAAAGGAAA TCCAACATGG GAGTGTCACA AATGCATTCC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8485] G_genome TTAAAGGAAA ACCAACATGG GAGTGTCACA AATGCATTCC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8466] Gossyp.kirkii TTAAGAGAAA ACCAACATGG GAGTGTCACA ACTGCATTCC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8396] Kokia.drynar TTAAGAGAAA ACCAACATGG GAGTGTCACA AATGCATTCC ATCCTCGAAT CGAAACCTGC CTAGCAG-AA [8399] [ 8550 8560 8570 8580 8590 8600 8610] [ . . . . . . .] A_genome CGACCCGTGA ACGCGTTGTA TACAA-CATC GGAGGTGGTG CGGGTGCATC GTTGCCTGTC CCCACCCCCG [8507] B_genome CGACCCGTGT ACGCGTTGTA AACAA-CATC GGAGGTGGTG CGGGTGCATC GTCGCCTCTC GCCACCCCCG [8554] C_genome CGACCCGCGA ACGCGTTGTA AACAA-CACC GGAGGTGGCG CGGGCGCATC CACGCCTCTC GCCACCCCCA [8496] D_genome CGACCCGCGA ACGAGTTGCA AACAA-CACC GGAGGTGGTG CGGGTGCATC CTCGCCTCTC GCCACCCCCG [8502] E_genome CGACCCGTGA ACGCGTTGTG AACAA-CACC GGAGGTGGTG CGGGTGCATC CACGCCTGTC AACACCCCCG [8552] F_genome CGACCCGTGA ACGCGTTGTA AACAA-CAT? GGAGGTGGTG CAGGTGCATC GTCGCCTGTT GCCACCCCCG [8554] G_genome CGACCCGCGA ACGCGTTGTA AACAAACACC GGAGGTGGTG CGGGTGCATC CGCGCCTCTC GCCACCCCCG [8536] Gossyp.kirkii CGACCCGTGA ACGAGTTGTA AACAA-CACC GGAGGTGGTG TGGGTGCATT C?TGCCTCTC GCCACTTCCT [8465] Kokia.drynar CGACCCGTGA ACGAGTTGTA AACAA-CACC GGAAGTGGTG TGGGTGCATC CTTGCCTCTC GCCACTTCCT [8468] [ 8620 8630 8640 8650 8660 8670 8680] [ . . . . . . .] A_genome CGTGTCGGAG CGGCCGGTCT TGTCATCCCT TTTGCCCATT GGGTGGGG-T GAGATGTCAG GATCAACTTC [8576] B_genome CGTGTCGGAG CGGCCGATCT TGTCGTCCCT TT-GCCCATC GGGTGGGG-T GAAACGTAAG GATCAACTTC [8622] C_genome CGTCTCGGAG TGGCCGGTCT CGTCGTCCCT TT-GCCCATC GGGTGGGG-T GAGATGTCAA GATCAACCTC [8564] D_genome TGTCTCGGAG CGGCCAGTCT CGTCGTCCCT CT-GCCCGTC GGGTGGGG-T GAGATGCCGG GATCAACCTC [8570] E_genome CGTCTTGAAG CAGTTGATCT CGTCGTCCCT TT-GCCCATC GGGTGGGGGT GAGATGTCAA GCTCAACCTC [8621] F_genome CGTGTCGGAG TGGCCGGTCT TGTCGTCCCT TT-GCCCATC GGGTGGGG-T GAGATGTCAG GATCAACCTC [8622] G_genome CGTCTCGGAG CGGTCGGTCT CGTCGTCCCT TT-GCCCATC GGGTGGGG-T GAGATGTCAA GATCAACCTC [8604] Gossyp.kirkii CGTC?CGGAG CGGTTGGTCT TGCTGTCCCT TC-GCC?ATC GGGTGGGG-T GAGATGTCAA GTTCAACCTT [8533] Kokia.drynar CGTCTCGGAG CTGTTGTTCT TGTCGTCCCT TT-GCCTATC GGGTGGGG-T GAGATGCCAG GTTCAACCTT [8536] [ 8690 8700 8710 8720 8730 8740 8750] [ . . . . . . .] A_genome TTCGATGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AATGAAA-AA A-GGGACACA [8644] B_genome CTCGATTCCA AACGGACCAA CCCCCGGCGC GAATCGCCCC CAGGAATCGA AACGAAA-AA AAGGGACACG [8691] C_genome TTCGAGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AACGAAA-AA A-GGGGCACG [8632] D_genome TTCGAGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AACGAAA-AA A-GGGGCACG [8638] E_genome TTCGAGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AACGAAA-AG A-GGGGCACA [8689] F_genome TTCGATGCAA AACGAACAAA CCCCCGGCGT GAATTGCGCC AAGGAATCGA AATGAAA-AA A-GGGACACG [8690] G_genome TTCGAGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AACGAGA-AA A-GGGGCACG [8672] Gossyp.kirkii TTCGGGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGG AACTAAAAAA AAGGGGCACG [8603] Kokia.drynar TCTGGGGCAA AACGAACAAA CCCCCGGCGC GAATCGCGCC AAGGAATCGA AACTAAA-AT AAGGGGCACG [8605] [ 8760 8770 8780 8790 8800 8810 8820] [ . . . . . . .] A_genome TCTCTTGTCG CCGCACCGTT CGCGGTGTCA GTGCTTCAGT GATGTTGTTC TTTTGTCGCA AAGTATATAG [8714] B_genome TCTACTGTTG TTGCACCGTT CGCGGTGTCA GTGCTTCAGT GATGTTGTTC TTTTGTCGCA AAATATATAG [8761] C_genome TCGTCTGTCG CCGCACCGTT CGCGGTGTCA GTGCTTCAGT GATGTTGTTC TCTTGTCGCA AAATATACAG [8702] D_genome TCTTCTGTCG CCGCACCGTT CGCGGTGTCG GTGCTTCAGT GATGCTGTTC TCTTGTCGCA AAATATACAG [8708] E_genome TCTTCTGTCG CTGCACCGTT CGCGGTGTCA ATGCTTCAG? GATGTTGTTC TCTTGTCGCA AAATATACAG [8759]F_genome TCTTATGTTG CCGCACCGTT CGCGGTGTCA GTGCTTCA GT GATGTTGTTC TTTTGTCGCA AAATATATAG [8760] G_genome TCTTCTGTCG CCTCACCGTT CGCGGTGTCA GTGCTTCAGT GATGTTGTTC TCTTGTCGCA AAATATACAG [8742] Gossyp.kirkii TCTTCTGTCA TCGCACCGTT CGCGGTGTCG CTGCTTCAGT GACGTTGTTC TTTTGTTGGA AAATATACAG [8673] Kokia.drynar TCTTCTGTCA TCGCACCGTT CGCGGTGTCG TTGCTTTAGT -ACGTTGTTC TTTTGTTGGA AAATATACAA [8674] [ 8830 8840 8850 8860 8870 8880 8890] [ . . . . . . .] A_genome AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8784] B_genome AACGACTCTC GGCAACGGA? ?????????? ?????????? ?????????? ??GAAATGCG ATACTTGGTG [8831] C_genome AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8772] D_genome AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8778] E_genome AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8829] F_genome AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8830] G_genome AACGACTCTC GGCAACGGAT ATCTCG???? ?????????? ?????????? ???AAATGCG ATACTTGGTG [8812] Gossyp.kirkii AACGACTCTC GGCAACGGAT ATCTCGGCTC TCGCATCGAT GAAGAACGTA GCGAAATGCG ATACTTGGTG [8743] Kokia.drynar AACGACTCTC GGCAACGGAT ATCT?????? ?????????? ?????????? ?????????? ???CTTGGTG [8744] [ 8900 8910 8920 8930 8940 8950 8960] [ . . . . . . .] A_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8854] B_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8901] C_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8842] D_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8848] E_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCACT AGGCCGAGGG [8899] F_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8900] G_genome TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8882] Gossyp.kirkii TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGCCGAGGG [8813] Kokia.drynar TGAATTGCAG AATCCCGTGA ACCATCGAGT CTTTGAACGC AAGTTGCGCC CCAAGCCATT AGGTCGAGGG [8814] [ 8970 8980 8990 9000 9010 9020 9030] [ . . . . . . .] A_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCTAA CCCCGATCCC TCGGGACTCG G-TTGGACCG [8923] B_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CCCCGATCCC TCGGGACTCG G-TTGGACCG [8970] C_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CCCTGAGCCC TCGGGCCTCG GTTTGGACCG [8912] D_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CCATGAGCCC TCGAGCCTCG G-TTGGACCG [8917] E_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CACTGAGCCT TCGGGCCTCG G-TTGGACCT [8968] F_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCC-?TCCAA CCCCGATCCC TCGGGACTCG GTTTGGACCG [8969] G_genome CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CCCTGAGCCC TCGGGCCTCG G-CTGGACCG [8951] Gossyp.kirkii CACGTCTGCC TGGGTGTCAC GCATCGTCGC CCCCATCCAA CCCTTAGCTC TCGGGCCTCG G-TTGAATTG [8882] Kokia.drynar CACGTCTGCC TGGGTGTCAC GCATAGTCGC CCCCATCCAA CCCTTAGCTC TCGGGCGTCG G-TTGAATTG [8883] [ 9040 9050 9060 9070 9080 9090 9100] [ . . . . . . .] A_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCTC ACAGCCAGCG GTTGGCCTAA ATTCGAGTCC TCGATGACAT [8991] B_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCCC ACAGCTAGCG GTTGGCCTAA ATTCGAGTCC TCGACGACAT [9038] C_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCTC ACAGCGAGCG GTTGGCCTAA ATTCGAGCCC TCGACGAGAT [8980] D_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCTC ACAGCCAGCG GTTGGCCTAA ATTCGAGTCC TCGACGACAT [8985] E_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCTC ACAGCTATCG GTTGGCCTAA ATTCGAGTCC TCGACGACAC [9036] F_genome C-GGGCGGAA ATTGGCC-TC CCGTGCGCTC ACAGCCAGCG GTTGGCCTAA ATTCGAGTCC TCGACGACAT [9037] G_genome CGGGGCGGAA ATTGGCCGTC CCGTGCGCTC ACAGCCAGCG GTTGGCCTAA ATTCGAGTCC TCGACGTCAT [9021] Gossyp.kirkii T-GGGCGGAA ATTGGCC-TC CCGTG?GCTC ATAGCTAACG GTTGGCCTAA ATTTGAGTCC TTGACGACAT [8950] Kokia.drynar T-GGGCGGAA ATTGGCC-TC CCGCGTGCTC ATAGCTAGCG GTTGGCCTAA ATTTCAGTCC TTGACGACAT [8951] [ 9110 9120 9130 9140 9150 9160 9170] [ . . . . . . .] A_genome AATCGTCGCG ACGATCGGTG GTAATGCTGT A--AGCAA-- CCTCGTTCGG AGTCGTGCGC GTTCGTCGAT [9057] B_genome AACCGTCGCG ACGATCGGTG GTAATGCTTT A--AGCAA-- CCTCGTTCGG AGTCGTGCGC GTTCGTCGAT [9104] C_genome CATCGTCGCG ACCATCGGTG GTAATGCTGT A--AGCAA-- CCTCGTTCGG AGTCGCGCGC GTTCGTCGAT [9046] D_genome CATCGTCGCG ACGATCGGTG GTAATGCTGT A--AGCAA-- CCTCGTTCGG AGTCGTGCGC GTCCGTCGAT [9051] E_genome CTTCGTCGCG ACCATCGGTG GTAATGCTGT A--AGCAA-- CCTCGTTTGG AGTCGTGTGC GTTCGTCGAT [9102] F_genome CATCGTCGCG ACCATCGGTG GTAATGCTGT A--AGCAA-- CCTCGTTCGG AGTCGTGCGC GTTCGTCGAT [9103] G_genome CATCGTCGCG ACCATCGGTG GTAATGCTGC A--AGCAAA- CCTCGTTCGG AGTCGCGCGC GTTCGACGGT [9088] Gossyp.kirkii CATCGTCGCG ACGATCGGTG GTAATGCTCT ATTAGCACAG CCTCGTTCAA AGTTGTGCAC GATGGTCGAT [9020] Kokia.drynar CATCGTCGCG ACGATCGGTG GTAATGCTCT ATTAGCACAG CCTCGTTCAA AGTTGTGCAC GATGGTCGAT [9021] [ 9180 9190 9200 9210 9220 9230 9240] [ . . . . . . .] A_genome CGAGACCCTT AAACCCTTTC GGCATCGCA? ?????????? ????GTACAT TTCTCTTTAA TTTCCTTCAT [9112] B_genome CGAGACCCTT GAACCCTTTC GGCATCGCAA GGACGGTGCT CGCAGTACAT TTCTCTTTAA TTTCCTTCGT [9174] C_genome CGAGACCCTT AAACCCTTTC GGCATCGCAA GGACGGTGCT CGCAGTACAT TTCTCTTTAA TTTCCTTCAT [9116] D_genome CGAGACCCTT GAACCCTTTC GGCATCGCAA GGACGGTGCT CGCAGTACAT TTCTCTTTAA TTTCCTTCAT [9121] E_genome CGAGACCCTT GAACCCTTTC GGCATCGCAA GGACGGTGCT CGCAGTACAT TTCTCTCTAA TTTCCTTCAT [9172] F_genome CGAGACCCTT GAACCCTTTT GGCATCGCAA GGATGATGCT CGCAGTACAT TTCTCTTTAA TTTCCTTCAT [9173] G_genome CGAGACCCTT GAACCCTTTC GGTATCGCAA GGACGGTGCT CGCAGTACAT TTCTCTTTCA TTTCCTTCAT [9158] Gossyp.kirkii CGAGGCCCTC GAACCCTTTT TGCATCGCAA TGACGGTGCT CGCAGTACTT TTCTCTTCAA TTTCCTT--- [9087] Kokia.drynar GAAGGCCCTC GAACCCTTTC GGCATCGCAA TGACGGTGCT CGCA?????? ?????????? ?????????? [9091] [ 9250 9260 9270 9280 9290 9300 9310] [ . . . . . . .] A_genome TTTTTTT--- -CCATTTCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9178] B_genome TTTTTTT--- -CCATTTCAT GTTTTTCCTG TTAATTTTGC ATGGACGTGA TAAATTTGAG TGAATGATGT [9240] C_genome TTTTTTTTTT TCCAYTTCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9186] D_genome TT-TTTT--- -CCATTCCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9186] E_genome TTTTTTT--- -CCATTTCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9238] F_genome TTTTTTT--- -CCATATCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9239] G_genome TTTTTTTT-- -CCATTTCAT GTTTTTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG TGAATGATGT [9225] Gossyp.kirkii ---------- --CATTTCAT GTTTCTCTTG TTAATTTTGC ATTGAAGTGA TAAATTTGAG T--------- [9136] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9161] [ 9320 9330 9340 9350 9360 9370 9380] [ . . . . . . .] A_genome TTGGTATATC TTCTTAGTAA CTGACCTTTT GAAAATACTA GCAT----TT TTTTTTTTTA ATATCAAGTG [9244] B_genome TTGGTATATC TTCTTAGTAA CTGACCTTTT GAAAATACTA GCAT----TT TTTTTA---A ATATCAAGTG [9303] C_genome TTGCTATATC TTCTTAGTAA CTGACCTTTT GAAAATACTA GCAT----TT TTTTT----A ATATCAAGTG [9248] D_genome TTGGTATATC TTCTTAGTAA CTGACCTTTT GAAAATACTA GCAT----TT TTTTTT---A ATATCAAGTG [9249] E_genome TTGATATATC TTCTTAGTAC CTGACCTTTT GAAAATACTA GCAT----TT TTTTTTT--A ATATCAAGTG [9302] F_genome TTGGTATATC TTCTTAGTAA CCGACCTTTT GAAAATACTA GCAT----TT TTTTT----A ATATCAAG-- [9299] G_genome TTGGTATATC TTCTTAGTAA CTGACCTTTT GAAAATACTA GCAT----TT TTTT-----A ATATCAAGTG [9286] Gossyp.kirkii -----ATATC TTCTTAGTAA CTGAGCTTTT GAAAATACTA GCTTCTTTTT TTTTTTTTTA ATATCAAGTG [9201] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9231] [ 9390 9400 9410 9420 9430 9440 9450] [ . . . . . . .] A_genome AAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAATTTCGCC ATGCAAAAAG CTTTTTAAGG CTCTTTTTT- [9313] B_genome AAAGAAGAAG AAGAAGAAGA AGAAGAA--- ---TTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTTTTT- [9366] C_genome AAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAATTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTT-TTT [9317] D_genome AAAGAAGAAG AA---GAA-- ---------- ---TTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTCTTTT [9301] E_genome AAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAATTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTTTTTT [9372] F_genome -AAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAATTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTTTTTT [9368] G_genome AAAGAAGAAG AAGAAGAA-- ---------- ---TTTCGCC ATGCAAAAAG CTTTTTAAGG CTTTTTCTTT [9341] Gossyp.kirkii AAAGAAGAAG ACGAAGAA-- ---------- ---TTTCGCC ATGYAAAAAG CTTTTT---- -TTTTTC--- [9248] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9301] [ 9460 9470 9480 9490 9500 9510 9520] [ . . . . . . .] A_genome TCTTAGATGA AAATTTATTT GTTTACTTAT ACTGTTCTTT TAAGCCTGAA GAAAGAAGCC ATGGTTT--- [9380] B_genome -CTTAGATCA AAATTTATTT GTTTACTTAT ACTGTTCTTT -AAGCCTGAA GAAAGARGCC ATGGTTT--- [9431] C_genome TCWWAGATCA AAATTTATTT GTTTACTTAT ACTGTTCTTT TAAGCCTGAA GAAAGAAGCC ATGGTTT--- [9384] D_genome CCTTAGATCA AAATTTATTT GTTTACTTAT ACTGTTCTTT ---------- ---------- ---------- [9341] E_genome TCTTAGATCA AAATTTATTT GTTTACTTA- -CTGTTCTTT TAAGCCTGAA GAGAGAAGCC ATGGTTT--- [9437] F_genome TCTTAGATCA AAATTTATTT GTTTACTTAT ACTGTTCTTT TAAGCCTGAG GAAAGAAGCC ATGGTTT--- [9435] G_genome TCATAGATCA AAATTTATTT GTTTACTTAT ACTGTTCTTT TAAGCCTGAA GAAAGAAGCC ATGGTTT--- [9408] Gossyp.kirkii -CTTAGATCC AAATTTATTT GTTTACTTAT AATGTTCTTT TAAGCCTGAA GAAAGAAGCC ATGGTTTTTT [9317] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9371] [ 9530 9540 9550 9560 9570 9580 9590] [ . . . . . . .] A_genome ---------- ---------- ----CAATTT TTGAGAGTTT TATAGATCCC AGATACCAGA GAGCTTCATC [9426] B_genome ---------- ---------- ----CAATTT TTGAGAGTTT TA--AATCCC AGATACTAGA GAGCTTCATC [9475] C_genome ---------- ---------- ----CAATTT TTGAGAGTTT TA--AATCCC AGATACCAGA GAGCTTCATC [9428] D_genome ---------- ---------- ----CAATTT TTGAGAGTTT TA--AATCCC AAATACCAGA GAGCTTCATC [9385] E_genome ---------- ---------- ----CACTTT TTGAGAGTTT TA--AATCCC AGATACCAGA GAGCTTCATC [9481] F_genome ---------- ---------- ----CAATTT TTGAGAGTTT TA--AATCCC AGATACCAGA GAGCTTCATC [9479] G_genome ---------- ---------- ----CAATTT TTGAGAGTTT TA--AATCCC AGATACCAGA GAGCTTCATC [9452] Gossyp.kirkii CTTTTTATAA AAAATAATTC TGCTCAATTT TTGAAAGTTT TA--AATCCC AGATACCAGA GAGCTTCATC [9385] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9441] [ 9600 9610 9620 9630 9640 9650 9660] [ . . . . . . .] A_genome ATTTATTCAT ATATTTTTGA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TTTTTTTGGT ---------- [9484] B_genome GTTTATTCAT ATATTTTTAA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TGTTTTTGGT ---------- [9533] C_genome GTTTACTCAT ACATTTTTAA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TGTTTTYGGT ---------- [9486] D_genome GTTTATTCAT ATATTTTTAA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TGTTTTTGGT ---------- [9443] E_genome GTTTATTCAT ATATTTTTAA ACATTTTTT- -AAAGCAAGA CCTTGTGATT TGTTTCTGGT ---------- [9539] F_genome G?TTATTCAT ATATTTTTAA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TGTTTTTGGT ---------- [9537] G_genome GTTTATTCAT ATATTTTTAA ACATTTTTT- -AAAGCAAGA ACTTGTGATT TGTTTTTGGT ---------- [9510] Gossyp.kirkii GTTTATTTAT ATATTTTTAA ACATTTTTTT TAAAGCATCA ACCTGTGATT TGTTTTTGTT CAAATCAGTG [9455] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9511] [ 9670 9680 9690 9700 9710 9720 9730] [ . . . . . . .] A_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9484] B_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9533] C_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9486] D_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9443] E_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9539] F_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9537] G_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9510] Gossyp.kirkii GCGGAGAGGA AGGAAGGACG AAATTAAATT TGTATATTTT TATTATTATA TTTTAGTAGT TTATATTAAC [9525] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9581] [ 9740 9750 9760 9770 9780 9790 9800] [ . . . . . . .] A_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9484] B_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9533] C_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9486] D_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9443] E_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9539] F_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9537] G_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9510] Gossyp.kirkii TTTTAAAAAG TTAAATTAAA TTTTTTATCA TTTTTGAATA GGTCATAAGT GTAATTTTAT TTTTATTAAT [9595] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9651] [ 9810 9820 9830 9840 9850 9860 9870] [ . . . . . . .] A_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9484] B_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9533] C_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9486] D_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9443] E_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9539] F_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9537] G_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9510] Gossyp.kirkii TTAAAATTTT GTAAATTGTA AAAGATTAAA TTAAAAATTT ATTATTTTAA GGGGTTACAA TATATATATA [9665] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9721] [ 9880 9890 9900 9910 9920 9930 9940] [ . . . . . . .] A_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9484] B_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9533] C_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9486] D_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9443] E_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9539] F_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9537] G_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9510] Gossyp.kirkii TATATATACA AAGGAGAAAA TTGTAAAAAT CTTAAAGTTT GGGGGTTTAC TTATATTTTT GAGAAGGTCA [9735] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9791] [ 9950 9960 9970 9980 9990 10000 10010] [ . . . . . . .] A_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9484] B_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9533] C_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9486] D_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9443] E_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9539] F_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9537] G_genome ---------- ---------- ---------- ---------- ---------- ---------- ---------- [9510] Gossyp.kirkii TAGTATATTT TCAAAGGGCT AAATTGAAAA AAATTTAAAC TTTAGAGTGC CATAGCCCTT GGGTCTCTAT [9805] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9861] [ 10020 10030 10040 10050 10060 10070 10080] [ . . . . . . .] A_genome ---------A AAATATGCAA TAAATCTTCA TATTTTTCGT AAATTTAAAA TTTAATCCTT TTAGTTTTTA [9545] B_genome ---------A AAATATGCAA TAAATCTTCA TATTTTTCAT AAATTTAAAA TTTAATCCTT TTATTTTTTA [9594] C_genome ---------A AAATATGCAA TAAATCTTCA TATTTTTTGT AAATTTAAAA TTTAATCCTT TTATCTTTTA [9547] D_genome ---------A AAATATGCAA TAAATTTTCA TATTTTTCGT AAATTTAAAA TTTGATTCTT TTACTTTTAA [9504] E_genome ---------A AAATATGCAA TAAATCTTCA TATTTTTTGT AAATTTAAAA TTTAATTCTT TTATTTTTTA [9600] F_genome ---------A AAATATGCAA TAAATYTTCA TATTTTTCGT AAATTTAAAA TTTAATCCTT TTATCTTTTA [9598] G_genome ---------A AAATATGCAA TAAATCTTCA TATTTTTCGT AAATTTAAAA TTTAATCCTT TTATCTTTTA [9571] Gossyp.kirkii TCGTTGGTTA AAATACGAAA TAAATCTTCC TATTTTTTGT AAATTTAAAA TTTAATCTTT ATATYTTTTA [9875] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [9931] [ 10090 10100 10110 10120 10130 10140 10150] [ . . . . . . .] A_genome GAATTTAATC TTTT------ --------TA AAATCTACGT TAAAT----- -------TTT TAACATTATT [9589] B_genome GAACTTAATC TTTT-ACTTT TTAGATTTTA AAATCTACGT TAAAT----- -------TTT TAATATTATT [9651] C_genome GAATTTAATC TTTT-ACTTT TTAGATTTTA AAATACAGAT TGAAT----- -------TTT TAACATTGTT [9604] D_genome GATTTAAATT TTTACTTTTT TTAGATTTTA AAATATAC-- ---------- ---------- ---------- [9542] E_genome AAATTTAATC TTTTTACTTT TTAAATTTTA AAATACACGT TAAAT----- -------TTT TAACATTATT [9658] F_genome AAATTTGATC TTTT-ATTTT TTAGATTTTA AAATACACGT TGAATCATTT TTAACATTTT TAACATTGTT [9667] G_genome GACTTTAATC TTTT-ACTTT TTAGATTTTA AA-TACACGT TGAAT----- -------TTT TAACATTGTT [9627] Gossyp.kirkii GAATTTAATT TCTCACATTT TCAAATTTAA TTTTYAACAT TGTTAAAATT ATT----TTT TAAATTTAGA [9941] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10001] [ 10160 10170 10180 10190 10200 10210 10220] [ . . . . . . .] A_genome AAAATTGTTT TA-TTAAATT TAGATTATTA TTAGTAATTG AGTATTTTTT T--ATTTCAA AATTTTACAT [9656] B_genome GAAATTATTT TA-TTAAATT TAGATTATTA TGAGTAATTG AGTATTTTTT T--ATTTCAA AATTTTACAT [9718] C_genome AAATTTATTT TA-TTAAATT TAGATTATTA TGAGTAATTG AGTATTTTTT TT-ATTTCAA AATTTTACAT [9672] D_genome ------GTTT CA-TTAAATT -AAATTATTA TAAGTAATTG AGTATTTT-- TA-ATTTTAA AATTTCACA- [9600] E_genome AAA------- --------TT TAGATTATTA TGAGTAATTG AGTATTTTTT TT-ACTTCAA AATTTTATAT [9712] F_genome AAAATTATTT TA-TTAAATT TAGATTATTA TGAATAATTG AGTATTTTTT T--ATTTCAA AATTTTACAT [9734] G_genome AAATTTATT- -----AAATT TAGATTATTA TGAGTAATTG AGTATTTTTT T--ATTTCAA AATTTTACAT [9689] Gossyp.kirkii TTATCAATTA CACTTTTAGT TATATTGCTA CTATTAAGTG AGTATTTTTT TTATTTTAAA ATATTTATAC [10011] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10071] [ 10230 10240 10250 10260 10270 10280 10290] [ . . . . . . .] A_genome CATCAAATTA AAAAAAAAAA --ACAAAGTT AACACTTGCA CTTGATTT-- ---------- ----CAATAT [9708] B_genome CATCAAATTA AAAARAAAAA --ACAAAGTT AA-------- ---------- ---------- ------ATAT [9752] C_genome CATCAARGTA AAAAAAA--- ---CAAAGTT AACACTTGTA CTTGATTT-- ---------- ----TAATAT [9720] D_genome CATCAAATTA AAAAAA---- ----AAAGTT AACACTTGCA CTTGA----- ---------- --GATTAAAT [9645] E_genome CATCAAATTA AAAAAAAAAA AAACAAAGTT AACACTTGCA CTTGATTT-- ---------- ----CAACAT [9766] F_genome CATCAAATTA AAAAAAAAAA ---CAAAGTT AACGCTTGTA CTTGATTT-- ---------- ----TAA--- [9782] G_genome CATCAAAGTA AAAAAAA--- ---CAAAGTT AACACTTGTA CTTGATTT-- ---------- ----TAATAT [9737] Gossyp.kirkii AATTAAATTT AACAAAAAAA TTATAAGATT AACAGTTAGA TTTGATTTTC AAAATATGAA AAATAARAAA [10081] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10141] [ 10300 10310 10320 10330 10340 10350 10360] [ . . . . . . .] A_genome CTAAAA---- -AATAGAAA- --------GG CTTAATTTTA AATTTTCAAA GAGTATAGGG ATTT--CTCT [9762] B_genome CTAAAA---- -AGTAGAAG- --------AG TTAAATTTCA AATTTTCAAA GAGTATAGAG ATTT--CTCT [9806] C_genome CTGAAA---- -AGTAGAAG- --------GG CTAAATTTTA AATTTTCAAA GAGTATAGGG ATTT--CTCT [9774] D_genome TTCAAATTTT TAGTAAAAG- --------GA TTAAATTTCA AATTTTCAAA GAGTATAGAG ACTT--CTCT [9704] E_genome ----AA---- -AATAAAAG- --------GA CTAAATTTCA ATTTTTCAAA GAGTA----- ---------- [9803] F_genome ---------- -------AG- --------GG CTAAATTTTA ATTTTTCAAA GAGTATAGGG ATTT--CTCT [9824] G_genome CTGAAA---- -AGTAGAAG- --------GG CTAAATTTTA AATTTTCAAA GAGTATAGGG ATTT--CTCT [9791] Gossyp.kirkii ATTAAATTCT TGAAAGTAAA TATACCTAGA CCAAATTTTA AATTTCCAAA AAATATAAAA ATTTTATTTT [10151] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10211] [ 10370 10380 10390 10400 10410 10420 10430] [ . . . . . . .] A_genome ACTT------ -TTTTAGATT TAAGTTTA-- --TTAACACT TTCTTAATTA CATTTCACTA AATTTAACTA [9821] B_genome ACTT------ -TTTTAGATT TAAATTTA-- --TTAACACT TTCTTAATTA CATTTCACTA AATTTAACTA [9865] C_genome ACTT------ -TTT-AGATT TAAATTTA-- --TTAACACT TTCTTAATTA CATTTCACTA AATTTAACTA [9832] D_genome ACATTTTAGA ATTTAAAATT TAAATCTAAC AGTTAACACT TTCTTAATTA CTTTACGATA AATTTAACTA [9774] E_genome -CTT------ -TTT-AGATT TAAATTTA-- --TTAACACT TTCTTAATTA AATTGCACTA AATTTAACTA [9860] F_genome A--T------ -TTTTAGATT TAAATTTA-- --TTAACACT TTCTTAATTA CATTTCACTA AATTTAACTA [9881] G_genome AATT------ -TTTTACATT TAAATTTA-- --TTAATACT TTCTTAATTA CATTTCACTA AATTTAACTA [9850] Gossyp.kirkii TC-----AGA TTTTAAAATT TAAGTCTAT- TATTAATACT TTCTTAGTTA CATTTCATTA AAATTAATTA [10215] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10281] [ 10440 10450 10460 10470 10480 10490 10500] [ . . . . . . .] A_genome AAAA-TTGCA ATATTAATAG TTAAAATTAA ATTTTAGAAA GTACAAAGAC TAAATTTTAA ATTTTCAAAA [9890] B_genome AAAAATTACA ATATTAATAG TTAAAATTAA AATTTGAAAA GTACAAGGAC TAAATTTTAA ATTTTCAAAA [9935] C_genome AAAAATTACA ATATTAATAG TTAAAATTAA AATTTGGAAA GAMCAAGGAC TAAATTTTAA ATTTTCAAAA [9902] D_genome AAAAATTACA ATATTAATGG TTAAAATTAA AATTTGAAAA GTATAAGGAT TAAATTGTAA ATTTGCAAAA [9844] E_genome AAAAAT-ACA ATATTAATAG TTAAAGTTAA ATTTTAGAAA GTACAAGGAC TAAATTTTAA ATTTTCAAAA [9929] F_genome AAA--TTACA ATATTAATAG TTAAAATTAA ATTTTGGAAA GTACAAGTAC TAAATTTTAA ATTTTCAAAA [9949] G_genome AAAAATTACA ATATTAATAG TTAAAATTAA AATTTGGAAA GTACAAGGAC TAAATTTTAA ATTTTCAAAA [9920] Gossyp.kirkii AAAAATTACA ATA------- ---------A AATTTGAAAA ATATAAGAGC TAAATTTTAA AATTTCA--- [10266] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10351] [ 10510 10520 10530 10540 10550 10560 10570] [ . . . . . . .] A_genome AATATAGGAA GTTATAGTAC ATTTTAACCT TTATTTATTT CATATATGAT GAGGTTCCTG CATGCACCGA [9960] B_genome AGTATAGGAA GTAATAGTAC ATTTTAACCT TTATTTATTT TATATATTAT GAGGTTCCTG CATGCACCGA [10005] C_genome AGTATAGGAA GTTATAGTAT ATTTTAACCT TTATTTATTT TATATATGAT GAGGTTCCTG CATGCAACGA [9972] D_genome AGTATAGGAA GTTATAGTAT ATTTTAACCT TTATTTATTT TATACCTGAT GAAGTTCCTG CATGCACCGA [9914] E_genome AGTAGAGGAA GTTATGGTAC ATTTTAACCT TTATTTATTT TATATATGAT GACGTTCCTG CATACACCGA [9999] F_genome AGTATAGGAA GTTATAGTAT ATTTTACCCT TTATTTATTT TATATATGAT GAGGTTCCTG CATGCA-CGA [10018] G_genome AGTATAGGAA GTTATAGTAT ATTTTAACCT TTATTTATTT TATATATGAT GAGGTTCCTG CATGCACCGA [9990] Gossyp.kirkii -------GAA TTTATAGTGT ATTTTAACCT TTATATTTTT TATATCTGAT GAGATTCCTG CATGCACTGG [10329] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10421] [ 10580 10590 10600 10610 10620 10630 10640] [ . . . . . . .] A_genome AGAAGTCACC TTTTGCCAGT ATTTTCGAGT GGCTTGTTTC TCTCAAAACT ACCTTGAATC TTGAGACAGA [10030] B_genome AGAAGTCACC TTTTGCCAGT ATTTTCGAGT GGCTTGTTTC TCTCAAAACT ACCTTGAATC TTGAGACAGA [10075] C_genome AGGAGTCACC TTTTGCCGGT ATTTYCGAGT GGCTTGTTTC TCTCAAAACT ACCTTGAATC TTGAGACAGA [10042] D_genome AGATGTCACC TTTTGCCAGT ATTTTCCAGT GGCTTGTTTC GCTCAAAACT ACCTTGAATC TTGAGACAGA [9984] E_genome AG-AGTCACC TTTTGCCAGT ATTTTCGAGT GGCTTGTTTC TCTCAAAACT ACCTTGAATC TTGAGACAGA [10068] F_genome AGAAGTCACC TTT-GCCAGT ATTTTCGAGT RGCTTGTTTC TCTCAAAACT ACCTTGAATC TTGAGACAGA [10087] G_genome CGAAGTCACC TTTTGCCAGT ATTTTCGAGT GGCTTGTTTC TGTCAAAACT ACCTTGAATC TTGAGACGGA [10060] Gossyp.kirkii AGAAGTCCCC TTTTGCCAGT RATTTCGAGT GGCTTGTTTC TCTCAAAACT ACCTTGAATT TTGAGATTGA [10399] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10491] [ 10650 10660 10670 10680 10690 10700 10710] [ . . . . . . .] A_genome ATTAAATATA ATTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATCTTCTT TTAAAAATTG CTTTAGAGAA [10100] B_genome ATTAAATATA ATTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTAAAAATTG CTTTAGAGAA [10145] C_genome ATTAAATATA TTTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTAAAAATTG CTTTAGAGAA [10112] D_genome ATTAAATATA CTTTTGGCCT TTTCTTCATT TTTTCTCTCT CTATTTTCTT TTTAAAATTG CTTTAGAGAA [10054] E_genome ATTAAATATA ATTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTAAAAATTG CTTCATAGAA [10138] F_genome ATTAAATATA GTTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTAAAAATTG CTTTAGAGAA [10157] G_genome ATTAAATATA TTTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTAAAAATTG CTTTAGAGAA [10130] Gossyp.kirkii ATTAAATATA TTTTTGGCCT TTTCTTCCAT TTTTCTCTCT CTATTTTCTT TTGAAAAATA ATAATAATAA [10469] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10561] [ 10720 10730 10740 10750 10760 10770 10780] [ . . . . . . .] A_genome TTCAGAAAAA ATACTTTCCA ACACGAAAAT TGCTTCAAAT TTATGGTTTA TATCTAATAA ATGGTTGCTT [10170] B_genome TTCAGAAAAA GTACTTTCCA ACACGAAAAT TGCTTCAAAT TTATTGTTCA TAT?TAATAA CTGGTTGCTT [10215] C_genome TTCAGAAAAA ATACTTTCCA ACACGAAAAT TGCTTCAAAT TTATTGTTTA TATCTAATAA ATGGTTGCTT [10182] D_genome TTCAGAAAAA ATACTTTCCA ACACGAAAAT TTCTTCAAAT TTATTGTTTA TATCTAATAA ATGGTTGCTT [10124] E_genome TTCAGAAAAA ATATTTTCCA ACACGAAAAT TGCTTCAAAT TTATTGTTTA TATCTAATAA ATGGTTGCTT [10208] F_genome TTCAGAAAAA ATACTTTCCA ACACGAAAAT TGCTTCAAAT TTATTGTTTA TATCTAATAA ATGGTTGCTT [10227] G_genome TTCAGAAAAA ATACTTTCCA ACAAGAAAAT TGCTTCAAAT TTATTGTTTA TATCTAATAA ATGGTTGCTT [10200] Gossyp.kirkii ATTGTTCAAA --ACTAGCAG ACAAGGAATT TGTAACAGAA RTTTTGTTT- TCTCTTTTA- ---GTTTCAT [10532] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10631] [ 10790 10800 10810 10820 10830 10840 10850] [ . . . . . . .] A_genome AATTT-AAAA AAAAAAA--G TTATTGTAAT TAGTTTTGCT TCTTGCATGT CCAGCCTGCA AAATGGGTGC [10237] B_genome AATTTCGAAA AAAAAAAAAG TTATTGTAAT TAATTTCGCT TCTTGCATGT CCAGCCAGCA AAATGGGTGC [10285] C_genome AGTTTCGAAA AAAAA----G TTATTGTAAT TAGTTTTGCT TCTTGCRTGT CCAGCCAGCA AAATGGGTGC [10248] D_genome AATTTTGGAA AACAAAA--G TTATTGTAGT TAGTTTTGCT TCTTGCGTGT CCAGCCAGCA AAATGGGTGC [10192] E_genome AATTTCGAAA AAAAAAA--G TTATTGTAAT TAGTTTTGCT TCTTGCATGT CCAGCCAGCA AAATGGGTGC [10276] F_genome AATTTCGAAA AAAAAAA--G TTTTTGTAAT TAGTTATGCT TCTTGCATGT CCAGCCAGCA AAATGGGTGC [10295] G_genome AATTTCGAAA AAAAAA---G TTATTGTAAT TAGTTTTGCT CCTTGCATGT CCAGCCAGCA AAATGGGTGC [10267] Gossyp.kirkii TATTT----- ---------- -TATTATAAT TAATTTTGAT TCTTGCATGT CCTGCCAGCA AAATGGGTGC [10586] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10701] [ 10860 10870 10880 10890 10900 10910 10920] [ . . . . . . .] A_genome CGGTGGTAGG ATGCTAGTTG ACGGTAAAAA GGAGGAAAAA CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10307] B_genome CGGTGGTCGG ATGCTAGTTG CCGGTAAAAA GGAGGAAAAT CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10355] C_genome CGGTGGTAGG ATGCTAGTTG ATGGTARAAA AGAGGAAAAT CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10318] D_genome CGGTGGTAGG ATGCCAATTG ACGGTATAAA GGAGGAAAAT CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10262] E_genome CGGGGGTAGG ATGCTAGTTG ACGGTAAAAA GGAGGAAAAT CGAGTCTCGG ACAATCGAGT TCCGATCGAG [10346] F_genome CGGTGGTAGG ATGCTAGTTG ACGGTAAAAA GGAGGAAATT CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10365] G_genome CGGTGGTAGG ATGCCAGTTG ACGGTAAAAA GGAGGAAAAT CGAGGCTCGG TCAATCGAGT TCCGATCGAG [10337] Gossyp.kirkii CGGTGGTAGG ATACTAGTTG ACGG------ ---------- ---------- -CAATCGAGT TCCGATTGAG [10629] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? [10771] [ 10930 10940 10950 10960 10970 10980 ] [ . . . . . . ] A_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10375] B_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10423] C_genome AAGCCTCCCT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10386] D_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10330] E_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10414] F_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10433] G_genome AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCATTC CGCCCCACTG TTTTCGCCGC TCCCTCCT [10405] Gossyp.kirkii AAGCCTCCGT TTACGCTCGG TCAGATCAAG CAAGCCGTTC CACCCCACTG TTTTCGCCGC TCCCTTCT [10697] Kokia.drynar ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???????? [10839]; END; [begin character partitions for Partition-Homogeneity tests] CHARPARTITION A1751vsAdhA = gene1:1-858, gene2:859-1811; CHARPARTITION A1751vsG1262 = gene1:1-858, gene3:1812-2745; CHARPARTITION A1751vsCesA1b = gene1:1-858, gene4:2746-3922; CHARPARTITION A1751vsCesA1 = gene1:1-858, gene5:3923-5008; CHARPARTITION A1751vsAdhC = gene1:1-858, gene6:5009-5948; CHARPARTITION A1751vsA1341 = gene1:1-858, gene7:5949-6629; CHARPARTITION A1751vsA1713 = gene1:1-858, gene8:6630-7224; CHARPARTITION A1751vsG1121 = gene1:1-858, gene9:7225-7972; CHARPARTITION A1751vsG1134 = gene1:1-858, gene10:7973-8519; CHARPARTITION A1751vsITS = gene1:1-858, gene11:8520-9214; CHARPARTITION A1751vsFAD2 = gene1:1-858, gene12:9215-10988; CHARPARTITION AdhAvsG1262 = gene2:859-1811, gene3:1812-2745; CHARPARTITION AdhAvsCesA1b = gene2:859-1811, gene4:2746-3922; CHARPARTITION AdhAvsCesA1 = gene2:859-1811, gene5:3923-5008; CHARPARTITION AdhAvsAdhC = gene2:859-1811, gene6:5009-5948; CHARPARTITION AdhAvsA1341 = gene2:859-1811, gene7:5949-6629; CHARPARTITION AdhAvsA1713 = gene2:859-1811, gene8:6630-7224; CHARPARTITION AdhAvsG1121 = gene2:859-1811, gene9:7225-7972; CHARPARTITION AdhAvsG1134 = gene2:859-1811, gene10:7973-8519; CHARPARTITION AdhAvsITS = gene2:859-1811, gene11:8520-9214; CHARPARTITION AdhAvsFAD2 = gene2:859-1811, gene12:9215-10988; CHARPARTITION G1262vsCesA1b = gene3: 1812-2745, gene4:2746-3922; CHARPARTITION G1262vsCesA1 = gene3: 1812-2745, gene5:3923-5008; CHARPARTITION G1262vsAdhC = gene3: 1812-2745, gene6:5009-5948; CHARPARTITION G1262vsA1341 = gene3: 1812-2745, gene7:5949-6629; CHARPARTITION G1262vsA1713 = gene3: 1812-2745, gene8:6630-7224; CHARPARTITION G1262vsG1121 = gene3: 1812-2745, gene9:7225-7972; CHARPARTITION G1262vsG1134 = gene3: 1812-2745, gene10:7973-8519; CHARPARTITION G1262vsITS = gene3: 1812-2745, gene11:8520-9214; CHARPARTITION G1262vsFAD2 = gene3: 1812-2745, gene12:9215-10988; CHARPARTITION CesA1bvsCesA1 = gene4:2746-3922, gene5:3923-5008; CHARPARTITION CesA1bvsAdhC = gene4:2746-3922, gene6:5009-5948; CHARPARTITION CesA1bvsA1341 = gene4:2746-3922, gene7:5949-6629; CHARPARTITION CesA1bvsA1713 = gene4:2746-3922, gene8:6630-7224; CHARPARTITION CesA1bvsG1121 = gene4:2746-3922, gene9:7225-7972; CHARPARTITION CesA1bvsG1134 = gene4:2746-3922, gene10:7973-8519; CHARPARTITION CesA1bvsITS = gene4:2746-3922, gene11:8520-9214; CHARPARTITION CesA1bvsFAD2 = gene4:2746-3922, gene12:9215-10988; CHARPARTITION CesA1vsAdhC = gene5:3923-5008, gene6:5009-5948; CHARPARTITION CesA1vsA1341 = gene5:3923-5008, gene7:5949-6629; CHARPARTITION CesA1vsA1713 = gene5:3923-5008, gene8:6630-7224; CHARPARTITION CesA1vsG1121 = gene5:3923-5008, gene9:7225-7972; CHARPARTITION CesA1vsG1134 = gene5:3923-5008, gene10:7973-8519; CHARPARTITION CesA1vsITS = gene5:3923-5008, gene11:8520-9214; CHARPARTITION CesA1vsFAD2 = gene5:3923-5008, gene12:9215-10988; CHARPARTITION AdhCvsA1341 = gene6:5009-5948, gene7:5949-6629; CHARPARTITION AdhCvsA1713 = gene6:5009-5948, gene8:6630-7224; CHARPARTITION AdhCvsG1121 = gene6:5009-5948, gene9:7225-7972; CHARPARTITION AdhCvsG1134 = gene6:5009-5948, gene10:7973-8519; CHARPARTITION AdhCvsITS = gene6:5009-5948, gene11:8520-9214; CHARPARTITION AdhCvsFAD2 = gene6:5009-5948, gene12:9215-10988; CHARPARTITION A1341vsA1713 = gene7:5949-6629, gene8:6630-7224; CHARPARTITION A1341vsG1121 = gene7:5949-6629, gene9:7225-7972; CHARPARTITION A1341vsG1134 = gene7:5949-6629, gene10:7973-8519; CHARPARTITION A1341vsITS = gene7:5949-6629, gene11:8520-9214; CHARPARTITION A1341vsFAD2 = gene7:5949-6629, gene12:9215-10988; CHARPARTITION A1713vsG1121 = gene8:6630-7224, gene9:7225-7972; CHARPARTITION A1713vsG1134 = gene8:6630-7224, gene10:7973-8519; CHARPARTITION A1713vsITS = gene8:6630-7224, gene11:8520-9214; CHARPARTITION A1713vsFAD2 = gene8:6630-7224, gene12:9215-10988; CHARPARTITION G1121vsG1134 = gene9:7225-7972, gene10:7973-8519; CHARPARTITION G1121vsITS = gene9:7225-7972, gene11:8520-9214; CHARPARTITION G1121vsFAD2 = gene9:7225-7972, gene12:9215-10988; CHARPARTITION G1134vsITS = gene10:7973-8519, gene11:8520-9214; CHARPARTITION G1134vsFAD2 = gene10:7973-8519, gene12:9215-10988; CHARPARTITION ITSvsFAD2 = gene11:8520-9214, gene12:9215-10988; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 857-944 992-1065 1478-1561 1638-1735 1810-1812 2882-3057 3132-3252 3305-3389 3532-3759 3922 4068-4240 4315-4403 4456-4549 4695-4832 5010 5126-5211 5295-5382 5459-5557 5620-5804 5901-7226 7320-7659 7881-10988, 1: 2-854\3 945-990\3 1067-1475\3 1562-1637\3 1738-1807\3 1813-2881\3 3060-3129\3 3253-3304\3 3392-3530\3 3761-4067\3 4243-4312\3 4404-4455\3 4552-4693\3 4834-5125\3 5214-5292\3 5383-5458\3 5560-5617\3 5805-5898\3 7227-7317\3 7660-7879\3, 2: 3-855\3 946-991\3 1068-1476\3 1563-1635\3 1736-1808\3 1814-2879\3 3058-3130\3 3254-3302\3 3390-3531\3 3762-4065\3 4241-4313\3 4405-4453\3 4550-4694\3 4835-5123\3 5212-5293\3 5384-5456\3 5558-5618\3 5806-5899\3 7228-7318\3 7661-7880\3, 3: 4-856\3 947-989\3 1066-1477\3 1564-1636\3 1737-1809\3 1815-2880\3 3059-3131\3 3255-3303\3 3391-3529\3 3760-3919\3 3925-4066\3 4242-4314\3 4406-4454\3 4551-4692\3 4833-5007\3 5013-5124\3 5213-5294\3 5385-5457\3 5559-5619\3 5807-5900\3 7229-7319\3 7662-7878\3; CODESET * UNTITLED = Universal: all; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; CHARSET A1751 = 1-858; CHARSET AdhA = 859-1811; CHARSET G1262 = 1812-2745; CHARSET CesA1b = 2746-3922; CHARSET CesA1 = 3923-5008; CHARSET AdhC = 5009-5948; CHARSET A1341 = 5949-6629; CHARSET A1713 = 6630-7224; CHARSET G1121 = 7225-7972; CHARSET G1134 = 7973-8519; CHARSET ITS = 8520-9214; CHARSET FAD2 = 9215-10988; CHARSET FAD2badaln1 = 10150-10230; CHARSET FAD2badaln2 = 10744-10802; END;