COLIN E. HUGHES, C. DONOVAN BAILEY, AND STEPHEN A. HARRIS.  2002.  Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and nrDNA polymorphism.  American Journal of Botany 89(7): 1057-1073. 

xread
'Hughes et al. cpDNA matrix'134 60
Desmanthus_fruticosus                                          001???10000000000000???????0000100100001000000010?????????????????000110011??000000??0000001???00000010000000011???????????110????????
L._greggii                                                     0110001100000100000001000100010010?0000101000101000100000????0??00000110000??010000000000100000000001000000011000100000101000100001101
L._cuspidata-2                                                 001???10000001000000???????000100000000100000000000001000000000000000110000000000000000000000000000000000000?00001000000010000????0001
L._cuspidata-3                                                 001???10000001000000???????00010010000010000000001000000000000????00011001100000000000000000000000000000000000000100000????000????0001
L._cuspidata-1                                                 001???10000001000000???????00110000000010000000001000000000000????0000001??00000000000000000000000000000000000000100000????000????0001
L._diversifolia-10                                             00000010000001100000???????001000010000100000000000001001000100000000101011001011001100000100011000000001011000000011000000001????0001
L._diversifolia-6                                              000???10000001100000???????00??????0000100000000000001001000100000000101011001011001100000100011000000001011?00000011000000001????0001
L._diversifolia_1,2,3,4,5,9                                    000???10000001100000???????00100001000010000000000100100100010????00010101100101100110000010001100000010000000000001100????001????0001
L._diversifolia-7                                              00000000000001100000???????001000010000100000000000001001000100000000101011001011001100000100011000000001011000000011000000001????0001
L._esculenta-1                                                 000???10000000010000???????000100000000000000000000001000?????0000000110010100010100000000000100000000000100?00001000001011000????0001
L._esculenta-2                                                 00100010000000010000???????000100000000000000000000001000000010000000110010101010100000000000100000000000100000001000001011000????0001
L._involucrata                                                 001???10000000000100???????000100000000000000000000001000000010000000110011000010100000000000100000000000100?00001000001011000????0001
L._lanceolata_var._lanceolata-3                                001001000000000000000000000000000010000000000010000010000010000001000000000??000000000000000000000000000000000000100000101000010000000
L._lanceolata_var._lanceolata-4                                001001000010000000000000000000000010000000000010000010000100000001000000000??000000000010000000000000000000000000010000101000001000000
L._lanceolata_var._lanceolata-1                                001???00000000000000???????000000010000000000010000010000000000001000000000010000000000000000000000000000000?00001000001010000????0000
L._lanceolata_var._sousae-2                                    101000000000000000000010010000000010000000000010000000000?00000001000000000??000000000010000000000100000000000000100000101000000100000
L._lanceolata_var._sousae-1                                    10100000000000000000001001000?00?0?0000000000010000000000000000001000000000??000000000000000000000100000000000000100000101000000100000
L._lempirana-1                                                 101???00000000000000???????000000000000000000000000000000000000000000000000010000000000000000000000000000000?00001000001010000????0000
L._lempirana-2                                                 101???00000000000000???????000000000000000000000000000000000000010000000000010000000000000000000000000000000?00001000001010000????0000
L._leucocephala_ssp._gla-1,2,4,5,7,8,13_&_leuco-1,4            000???10000001100000???????00101010000010000000000000101010000????00010101100101100110000010100100000010000000000000110????001????0001
L._leuco_ssp.__glab-3,6,9,10,11,12,15,17_&_ixtah-2_&_leuco-2,3 000???10000001100000???????001010100000100000000000001010100000100000101011001011001100000101001000000100000?00000001100000001????0001
L._leucocephala_ssp._ixtahuacana-1                             000???10000001100001???????1110100000011000000000?????????????????001101011??101100??0000010???10000001000000000???????????001????????
L._macrophylla_ssp._macrophylla                                ??1???????????000000???????000000001100010010000000000000000000000000000000??000000001000000000000000000000000000010000101000000010000
L._macrophylla_ssp._istmensis-1                                001100000000000000000000001000000011100010010000000000000001000000000000000??000000001010000000000000000000000000010000101000010000000
L._macrophylla_ssp._istmensis-2                                001100000000000000000000001000000001100010010000000000000001000000000000000??000000001010000000000000000000000000010000101000010000000
L._magnifica-2                                                 001000000000000000000000010000000010000000000000000000000100000100000000000??000000000001000000010000000000000000100000101000010000000
L._magnifica-1                                                 001000000000000000000000010000000010000000000000000000000010000100000000000??000000000001000000010000000000000000100000101000010000000
L._matudae                                                     00100000000000010000???????001000000000000000000000001000???????00000110001000010010000000000100000000010010000000000001011000????0001
L._multicapitula-2                                             0010000000010000000000100010000000?0000000100000000000000????00000000000000??000000000010000000000010000000000000000001101000000010010
L._multicapitula-1                                             001000000000100000000001001000000010000000100000000000000????00000000000000??000000000000000000100000000000000000000001101000000010010
L._pallida-2,_4                                                001???10000000001000???????00010000000000000000000000100000001????00011001100001010000000000010000000000010000000100000????000????0001
L._pallida-3                                                   001???10000000001000???????00010000000000000000000000000000001????00011001100001010000000000010000000000010000000100000????000????0001
L._pallida-1                                                   001???10000000001000???????000100000000000000000000001000000010000000110011000010100000000000100000000000100?00001000001011000????0001
L._pueblana-2                                                  00100010000000001000???????000100000000000000000000001000000010000000110011001010100000000000100000000000100000001000001011000????0001
L._pueblana-1                                                  001???10000000001000???????000100000000000000000000001000000010000000110011001010100000000000100000000000100000001000001011000????0001
L._pulverulenta-2,4,6                                          00000010000001100000???????001010100000100000000000001010100000000000101011001010101100000101001000000100000000000001100000001????0001
L._retusa                                                      001010111100000000001010100001001000010101000001000100100100001000000110000??010000000100000000001000000000001000000000101000100000001
L._salvadorensis-4                                             001???00001000000000???????000000000000001000000100000000000000001010000000010000000000000000000000000000000?00001000001010000????0000
L._salvadorensis-3                                             001000000010000000000010000000000010000000100000100000000????00001000000000??000000000000000000000000000000000000100000101000000010010
L._salvadorensis-1                                             001000000010000000000010000000000000000000100000100000000????00001000000000??000000000000000000000000000000000000100000101000000010010
L._salvadorensis-2                                             001???00001000000000???????000000000000001000000100000000000000001000000000010000000000000000000000000000000?00001000001010000????0000
L._salvadorensis-5                                             001???00001000000000???????000000000000001000000100000000000000001010000000010000000000000000000000000000000?00011000001010000????0000
L._shannonii-2,3,5,6                                           001???00000000000000???????000000010000000000000000000000000000100000000000010000000000000000000100000000000?00001000001010000????0000
L._shannonii-1                                                 001000000000000000001000000000000000000000000000000000000010000100000000000??000000000000000000010000000000000000100000101000010000000
L._trichandra-3                                                001???00000000000000???????00000000000000000000000000000000000????00000000001000000000000000000010000000000000000100000????000????0000
L._trichandra-1,2,6                                            001???00000000000000???????00000000000000000000000000000000000????00000000001000000000000000000000000000000000000100000????000????0000
L._trichandra-8,12                                             001???00000000000000???????000000000000000000000000000000000000000000000000010000000000000000000100000000000?00001000001010000????0000
L._trichandra-7                                                001???00000000000000???????000000000000000000000000010000000000000100000000010000000000000000000000000000000?00001000001010000????0000
L._trichodes-1                                                 101000000000000000000010001000000010000000000000000000000????00000000000010??000000000000000000000000000000000001010000101000000000000
L._trichodes-2                                                 001100000000000000000000001000000010000000000000000000000000000000000000010??000000000000000000000000000000000001010000101000000000000
Schlienitzia_novoguieensis                                     101???10000000000010???????1100100100010000000010?????????????????001110011??000000?????????????????????????0000???????????100????????
L._leucocephala_ssp._glabrata-14,16                            00000010000001100000???????001010100000100000000000001010100000100000101011001011001100000101001000000100000000000001100000001????0001
L._trichandra-9,10,11                                          001???00000000000000???????0000000100000000000000?????????????????000000000??000000??0000000???01000000000000000???????????000????????
L._trichandra-5                                                0010000????????00000???????000000000000000000000000000000000000100000000000010000000000000000000000000000000000001000001010000????0000
L._collinsii_ssp._collinsii-1,2                                00100000000000000000???????000000000000000000000000000000000000100000000000010000000000000000000100000000000000001000001010000????0000
L._collinsii_ssp._zacapana-2                                   ??1000?0000000000000???????000000000000000000000000000000000000100000000000010000000000000000000000000000000000001000001010000????0000
L._collinsii_ssp._zacapana_1,_3__&_L._trichandra-4             00100000000000000000???????000000000000000000000000000000000000100000000000010000000000000000000000000000000000001000001010000????0000
L._lanceolata_ssp._lanceolata-2,5                              001???00000000000000???????0000000100000000000000?????????????????000000000??000000??0000000???00000000000000000???????????000????????
L._confert_var._adeno-1,3_&_confert-1                          001???10000000000000???????00100000000000000000000000000000000????00000000001000000000000000000000000000000000000100000????000????0000
_L._confertiflora_var._adenotheloidea-1                        001???00000000000000???????0010000000000000000000?????????????????000000000??000000??0000000???00000000000000000???????????000????????
;
cc - 0.133;
cc ] 1 4 8.9 11.12 17.19 21 23.24 37 44.45 50 54 62 64 66 72 82 86 89 91 97 99.101 103 108 110.111 120 124 127 130.131;
proc /;
optcode u 0.133;
;